6VKL

Negative stain reconstruction of the yeast exocyst octameric complex.

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
C	SCOP2B Superfamily	Cullin repeat-like	8052698	3000059	SCOP2B (2022-06-29)
H	SCOP2B Superfamily	Cullin repeat-like	8039534	3000059	SCOP2B (2022-06-29)
G	SCOP2B Superfamily	Cullin repeat-like	8037698	3000059	SCOP2B (2022-06-29)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A	PF09763	Exocyst complex component Sec3, coiled-coil (Sec3_CC)	Exocyst complex component Sec3, coiled-coil	-	Repeat
B	PF15469	Exocyst complex component Sec5 (Sec5)	Exocyst complex component Sec5	-	Repeat
C	PF06046	Exocyst complex component Sec6 (Sec6)	Exocyst complex component Sec6	-	Repeat
D	PF04048	Exocyst complex component Sec8 N-terminal (Sec8_N)	Exocyst complex component Sec8 N-terminal	-	Repeat
F	PF20651	Exocyst complex component EXOC6/Sec15, N-terminal (EXOC6_Sec15_N)	Exocyst complex component EXOC6/Sec15, N-terminal	-	Repeat
F	PF04091	Exocyst complex subunit Sec15 C-terminal (Sec15_C)	Exocyst complex subunit Sec15 C-terminal	-	Repeat
H	PF16528	Exocyst component 84 C-terminal (Exo84_C)	Exocyst component 84 C-terminal	-	Repeat
H	PF08700	Vps51/EXO84/COG1 N-terminal (VPS51_Exo84_N)	Vps51/EXO84/COG1 N-terminal	-	Repeat
E	PF07393	Exocyst complex component Sec10-like, alpha-helical bundle (Sec10_HB)	Exocyst complex component Sec10-like, alpha-helical bundle	-	Repeat
E	PF20667	Exocyst complex component Sec10, N-terminal (Sec10_N)	Exocyst complex component Sec10, N-terminal	-	Repeat
G	PF03081	Exo70 exocyst complex subunit C-terminal (Exo70_C)	Exo70 exocyst complex subunit C-terminal	-	Repeat
G	PF20669	Exocyst complex component Exo70 N-terminal (Exo70_N)	Exocyst complex component Exo70 N-terminal	-	Repeat

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A	Exocyst complex component SEC3	binding ion binding phosphatidylinositol-4,5-bisphosphate binding anion binding phosphatidylinositol bisphosphate binding phospholipid binding lipid binding phosphatidylinositol phosphate binding phosphatidylinositol binding small molecule binding small GTPase binding protein binding enzyme binding GTPase binding	cellular component organization organelle organization organelle inheritance cellular process cellular component organization or biogenesis endoplasmic reticulum inheritance endoplasmic reticulum organization endomembrane system organization Golgi to plasma membrane transport cellular localization post-Golgi vesicle-mediated transport transport localization within membrane establishment of localization cellular component organization organelle organization organelle inheritance cellular process cellular component organization or biogenesis endoplasmic reticulum inheritance endoplasmic reticulum organization endomembrane system organization Golgi to plasma membrane transport cellular localization post-Golgi vesicle-mediated transport transport localization within membrane establishment of localization vesicle-mediated transport vesicle-mediated transport to the plasma membrane localization Golgi vesicle transport protein-containing complex organization secretion exocyst assembly export from cell membrane docking cellular component biogenesis organelle localization by membrane tethering cellular component assembly secretion by cell exocytosis organelle localization protein-containing complex assembly vesicle docking exocytic process vesicle docking involved in exocytosis protein localization establishment of protein localization nitrogen compound transport organic substance transport protein transport cellular macromolecule localization macromolecule localization exocyst localization protein-containing complex localization	incipient cellular bud site cellular anatomical entity site of polarized growth cellular bud cellular bud tip cell projection mating projection cell tip mating projection tip cell pole plasma membrane bounded cell projection cell periphery plasma membrane membrane incipient cellular bud site cellular anatomical entity site of polarized growth cellular bud cellular bud tip cell projection mating projection cell tip mating projection tip cell pole plasma membrane bounded cell projection cell periphery plasma membrane membrane ascospore-type prospore prospore membrane intracellular immature spore cellular bud neck intracellular anatomical structure cytoplasm protein-containing complex cell cortex exocyst vesicle tethering complex
B	Exocyst complex component SEC5	-	cellular component organization organelle organization organelle inheritance cellular process cellular component organization or biogenesis endoplasmic reticulum inheritance endoplasmic reticulum organization endomembrane system organization Golgi to plasma membrane transport cellular localization post-Golgi vesicle-mediated transport transport localization within membrane establishment of localization cellular component organization organelle organization organelle inheritance cellular process cellular component organization or biogenesis endoplasmic reticulum inheritance endoplasmic reticulum organization endomembrane system organization Golgi to plasma membrane transport cellular localization post-Golgi vesicle-mediated transport transport localization within membrane establishment of localization vesicle-mediated transport vesicle-mediated transport to the plasma membrane localization Golgi vesicle transport protein-containing complex organization secretion exocyst assembly export from cell membrane docking cellular component biogenesis organelle localization by membrane tethering cellular component assembly secretion by cell exocytosis organelle localization protein-containing complex assembly vesicle docking exocytic process vesicle docking involved in exocytosis protein localization establishment of protein localization nitrogen compound transport organic substance transport protein transport cellular macromolecule localization macromolecule localization	incipient cellular bud site cellular anatomical entity site of polarized growth cellular bud cellular bud tip cell projection mating projection cell tip mating projection tip cell pole plasma membrane bounded cell projection cell periphery ascospore-type prospore membrane incipient cellular bud site cellular anatomical entity site of polarized growth cellular bud cellular bud tip cell projection mating projection cell tip mating projection tip cell pole plasma membrane bounded cell projection cell periphery ascospore-type prospore membrane prospore membrane intracellular immature spore cellular bud neck protein-containing complex cell cortex intracellular anatomical structure exocyst cytoplasm vesicle tethering complex
C	Exocyst complex component SEC6	protein binding binding SNARE binding	Golgi to plasma membrane transport cellular localization post-Golgi vesicle-mediated transport transport localization within membrane establishment of localization vesicle-mediated transport vesicle-mediated transport to the plasma membrane localization cellular process Golgi vesicle transport protein localization establishment of protein localization nitrogen compound transport Golgi to plasma membrane transport cellular localization post-Golgi vesicle-mediated transport transport localization within membrane establishment of localization vesicle-mediated transport vesicle-mediated transport to the plasma membrane localization cellular process Golgi vesicle transport protein localization establishment of protein localization nitrogen compound transport organic substance transport protein transport cellular macromolecule localization macromolecule localization exocyst localization protein-containing complex localization regulation of localization regulation of cellular process regulation of cellular component organization membrane fusion organelle membrane fusion negative regulation of biological process regulation of vesicle fusion negative regulation of vesicle fusion negative regulation of transport cellular component organization cellular component biogenesis vesicle organization regulation of protein-containing complex assembly cellular component assembly protein-containing complex assembly negative regulation of cellular process SNARE complex assembly cellular component organization or biogenesis negative regulation of SNARE complex assembly membrane organization regulation of biological process negative regulation of cellular component organization protein-containing complex organization regulation of transport biological regulation regulation of cellular component biogenesis regulation of vesicle-mediated transport regulation of organelle organization negative regulation of protein-containing complex assembly organelle fusion organelle organization regulation of SNARE complex assembly negative regulation of organelle organization vesicle fusion secretion export from cell membrane docking organelle localization by membrane tethering secretion by cell exocytosis organelle localization vesicle docking exocytic process vesicle docking involved in exocytosis	cellular bud cellular anatomical entity cellular bud tip site of polarized growth cell projection mating projection cell tip mating projection tip cell pole plasma membrane bounded cell projection ascospore-type prospore membrane prospore membrane intracellular immature spore cellular bud cellular anatomical entity cellular bud tip site of polarized growth cell projection mating projection cell tip mating projection tip cell pole plasma membrane bounded cell projection ascospore-type prospore membrane prospore membrane intracellular immature spore cellular bud neck cell periphery protein-containing complex cell cortex intracellular anatomical structure exocyst cytoplasm vesicle tethering complex
D	Exocyst complex component SEC8	-	cellular component organization organelle organization organelle inheritance cellular process cellular component organization or biogenesis endoplasmic reticulum inheritance endoplasmic reticulum organization endomembrane system organization Golgi to plasma membrane transport cellular localization post-Golgi vesicle-mediated transport transport localization within membrane establishment of localization cellular component organization organelle organization organelle inheritance cellular process cellular component organization or biogenesis endoplasmic reticulum inheritance endoplasmic reticulum organization endomembrane system organization Golgi to plasma membrane transport cellular localization post-Golgi vesicle-mediated transport transport localization within membrane establishment of localization vesicle-mediated transport vesicle-mediated transport to the plasma membrane localization Golgi vesicle transport Golgi inheritance Golgi organization protein localization establishment of protein localization nitrogen compound transport organic substance transport protein transport cellular macromolecule localization macromolecule localization secretion export from cell membrane docking organelle localization by membrane tethering secretion by cell exocytosis organelle localization vesicle docking exocytic process vesicle docking involved in exocytosis vesicle localization establishment of organelle localization establishment of vesicle localization vesicle targeting vesicle tethering involved in exocytosis establishment of localization in cell vesicle tethering	incipient cellular bud site cellular anatomical entity site of polarized growth cellular bud cellular bud tip cell projection mating projection cell tip mating projection tip cell pole plasma membrane bounded cell projection cell periphery plasma membrane membrane incipient cellular bud site cellular anatomical entity site of polarized growth cellular bud cellular bud tip cell projection mating projection cell tip mating projection tip cell pole plasma membrane bounded cell projection cell periphery plasma membrane membrane ascospore-type prospore prospore membrane intracellular immature spore cellular bud neck intracellular anatomical structure cytoplasm protein-containing complex cell cortex exocyst vesicle tethering complex
F	Exocyst complex component SEC15	small GTPase binding protein binding binding enzyme binding GTPase binding	protein localization cellular localization establishment of protein localization nitrogen compound transport transport organic substance transport intracellular transport establishment of localization localization protein transport establishment of localization in cell cellular macromolecule localization macromolecule localization cellular process protein localization cellular localization establishment of protein localization nitrogen compound transport transport organic substance transport intracellular transport establishment of localization localization protein transport establishment of localization in cell cellular macromolecule localization macromolecule localization cellular process intracellular protein transport Golgi to plasma membrane transport post-Golgi vesicle-mediated transport localization within membrane vesicle-mediated transport vesicle-mediated transport to the plasma membrane Golgi vesicle transport secretion export from cell membrane docking organelle localization by membrane tethering secretion by cell exocytosis organelle localization vesicle docking exocytic process vesicle docking involved in exocytosis vesicle localization establishment of organelle localization establishment of vesicle localization vesicle targeting cellular component organization vesicle tethering involved in exocytosis cellular component organization or biogenesis vesicle tethering	incipient cellular bud site cellular anatomical entity site of polarized growth cellular bud cellular bud tip cell projection mating projection cell tip mating projection tip cell pole plasma membrane bounded cell projection cell periphery plasma membrane membrane incipient cellular bud site cellular anatomical entity site of polarized growth cellular bud cellular bud tip cell projection mating projection cell tip mating projection tip cell pole plasma membrane bounded cell projection cell periphery plasma membrane membrane ascospore-type prospore prospore membrane intracellular immature spore cellular bud neck protein-containing complex cell cortex intracellular anatomical structure exocyst cytoplasm vesicle tethering complex
H	Exocyst complex component EXO84	-	ribonucleoprotein complex biogenesis cellular biosynthetic process RNA metabolic process mRNA processing protein-RNA complex assembly cellular component organization cellular component biogenesis nucleobase-containing compound metabolic process spliceosomal complex assembly protein-RNA complex organization cellular component assembly organic substance metabolic process protein-containing complex assembly organic substance biosynthetic process ribonucleoprotein complex biogenesis cellular biosynthetic process RNA metabolic process mRNA processing protein-RNA complex assembly cellular component organization cellular component biogenesis nucleobase-containing compound metabolic process spliceosomal complex assembly protein-RNA complex organization cellular component assembly organic substance metabolic process protein-containing complex assembly organic substance biosynthetic process cellular component organization or biogenesis RNA processing RNA splicing protein-containing complex organization cellular metabolic process primary metabolic process gene expression mRNA metabolic process macromolecule biosynthetic process nucleic acid metabolic process organic cyclic compound metabolic process biosynthetic process RNA splicing, via transesterification reactions mRNA splicing, via spliceosome cellular process metabolic process RNA splicing, via transesterification reactions with bulged adenosine as nucleophile macromolecule metabolic process Golgi to plasma membrane transport cellular localization post-Golgi vesicle-mediated transport transport localization within membrane establishment of localization vesicle-mediated transport vesicle-mediated transport to the plasma membrane localization Golgi vesicle transport protein localization cellular macromolecule localization macromolecule localization secretion exocyst assembly export from cell membrane docking organelle localization by membrane tethering secretion by cell exocytosis organelle localization vesicle docking exocytic process vesicle docking involved in exocytosis establishment of protein localization nitrogen compound transport organic substance transport protein transport exocyst localization protein-containing complex localization	incipient cellular bud site cellular anatomical entity site of polarized growth cellular bud cellular bud tip cell projection mating projection cell tip mating projection tip cell pole plasma membrane bounded cell projection ascospore-type prospore membrane prospore membrane incipient cellular bud site cellular anatomical entity site of polarized growth cellular bud cellular bud tip cell projection mating projection cell tip mating projection tip cell pole plasma membrane bounded cell projection ascospore-type prospore membrane prospore membrane intracellular immature spore membrane-bounded organelle intracellular anatomical structure transport vesicle intracellular vesicle intracellular membrane-bounded organelle endomembrane system intracellular organelle cytoplasmic vesicle organelle cytoplasm vesicle cellular bud neck cell periphery protein-containing complex cell cortex exocyst vesicle tethering complex
E	Exocyst complex component SEC10	-	transport secretion export from cell membrane docking establishment of localization vesicle-mediated transport localization organelle localization by membrane tethering secretion by cell exocytosis organelle localization vesicle docking exocytic process cellular process transport secretion export from cell membrane docking establishment of localization vesicle-mediated transport localization organelle localization by membrane tethering secretion by cell exocytosis organelle localization vesicle docking exocytic process cellular process vesicle docking involved in exocytosis Golgi to plasma membrane transport cellular localization post-Golgi vesicle-mediated transport localization within membrane vesicle-mediated transport to the plasma membrane Golgi vesicle transport protein localization establishment of protein localization nitrogen compound transport organic substance transport protein transport cellular macromolecule localization macromolecule localization	cellular bud neck cellular bud cellular anatomical entity site of polarized growth cell periphery protein-containing complex cell cortex intracellular anatomical structure exocyst cytoplasm vesicle tethering complex cell projection mating projection cell tip cellular bud neck cellular bud cellular anatomical entity site of polarized growth cell periphery protein-containing complex cell cortex intracellular anatomical structure exocyst cytoplasm vesicle tethering complex cell projection mating projection cell tip mating projection tip cell pole plasma membrane bounded cell projection
G	Exocyst complex component EXO70	binding ion binding phosphatidylinositol-4,5-bisphosphate binding anion binding phosphatidylinositol bisphosphate binding phospholipid binding lipid binding phosphatidylinositol phosphate binding phosphatidylinositol binding small molecule binding small GTPase binding protein binding enzyme binding GTPase binding	Golgi to plasma membrane transport cellular localization post-Golgi vesicle-mediated transport transport localization within membrane establishment of localization vesicle-mediated transport vesicle-mediated transport to the plasma membrane localization cellular process Golgi vesicle transport protein-containing complex organization secretion exocyst assembly Golgi to plasma membrane transport cellular localization post-Golgi vesicle-mediated transport transport localization within membrane establishment of localization vesicle-mediated transport vesicle-mediated transport to the plasma membrane localization cellular process Golgi vesicle transport protein-containing complex organization secretion exocyst assembly export from cell membrane docking cellular component organization cellular component biogenesis organelle localization by membrane tethering cellular component assembly secretion by cell exocytosis organelle localization protein-containing complex assembly vesicle docking exocytic process cellular component organization or biogenesis vesicle docking involved in exocytosis protein localization establishment of protein localization nitrogen compound transport organic substance transport protein transport cellular macromolecule localization macromolecule localization exocyst localization protein-containing complex localization cellular response to stimulus regulation of biological process small GTPase-mediated signal transduction regulation of cellular process response to stimulus signaling biological regulation Rho protein signal transduction intracellular signal transduction cell communication intracellular signaling cassette signal transduction	incipient cellular bud site cellular anatomical entity site of polarized growth cellular bud cellular bud tip cell projection mating projection cell tip mating projection tip cell pole plasma membrane bounded cell projection cell periphery plasma membrane membrane incipient cellular bud site cellular anatomical entity site of polarized growth cellular bud cellular bud tip cell projection mating projection cell tip mating projection tip cell pole plasma membrane bounded cell projection cell periphery plasma membrane membrane ascospore-type prospore prospore membrane intracellular immature spore membrane-bounded organelle intracellular anatomical structure transport vesicle intracellular vesicle intracellular membrane-bounded organelle endomembrane system intracellular organelle cytoplasmic vesicle organelle cytoplasm vesicle cellular bud neck protein-containing complex cell cortex exocyst vesicle tethering complex

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A	IPR048628	Exocyst complex component Sec3, C-terminal	Domain
A	IPR028258	Exocyst complex component Sec3, PIP2-binding N-terminal domain	Domain
A	IPR019160	Exocyst complex component Sec3, coiled-coil	Domain
B	IPR029175	Exocyst complex component EXOC2/Sec5	Family
B	IPR039481	Exocyst complex component EXOC2/Sec5, N-terminal domain	Domain
C	IPR010326	Exocyst complex component EXOC3/Sec6	Family
C	IPR042532	Exocyst complex component EXOC3/Sec6, C-terminal domain	Homologous Superfamily
D	IPR039682	Exocyst complex component Sec8/EXOC4	Family
D	IPR007191	Exocyst complex component Sec8, N-terminal	Domain
D	IPR048630	Exocyst complex component Sec8, middle helical bundle	Domain
F	IPR007225	Exocyst complex component EXOC6/Sec15	Family
F	IPR042045	Exocyst complex component EXOC6/Sec15, C-terminal, domain 1	Homologous Superfamily
F	IPR042044	EXOC6/PINT-1/Sec15/Tip20, C-terminal, domain 2	Homologous Superfamily
F	IPR048359	Exocyst complex component EXOC6/Sec15, N-terminal domain	Domain
F	IPR046361	Exocyst complex subunit EXOC6/Sec15, C-terminal	Domain
H	IPR042561	Exocyst component Exo84, C-terminal, subdomain 1	Homologous Superfamily
H	IPR033961	Exocyst complex component Exo84	Family
H	IPR032403	Exocyst component Exo84, C-terminal	Domain
H	IPR011993	PH-like domain superfamily	Homologous Superfamily
H	IPR016159	Cullin repeat-like-containing domain superfamily	Homologous Superfamily
H	IPR042560	Exocyst component Exo84, C-terminal, subdomain 2	Homologous Superfamily
E	IPR048625	Exocyst complex component Sec10, N-terminal	Domain
E	IPR048627	Exocyst complex component Sec10-like, alpha-helical bundle	Domain
E	IPR009976	Exocyst complex component Sec10-like	Family
G	IPR004140	Exocyst complex component Exo70	Family
G	IPR046364	Exocyst complex subunit Exo70, C-terminal	Domain
G	IPR016159	Cullin repeat-like-containing domain superfamily	Homologous Superfamily

RCSB PDB Core Operations are funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.

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6VKL

Negative stain reconstruction of the yeast exocyst octameric complex.

External Resource: Annotation

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Protein Family Annotation Pfam Database Homepage

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

InterPro: Protein Family Classification InterPro Database Homepage