Download MendeleyCrystal Structure of Lactobacillus farciminis Oxalate Decarboxylase Formate Complex
Wu, F., Cheng, L.K., Wang, C.Y.To be published.
6L9I
Crystal Structure of Lactobacillus farciminis Oxalate Decarboxylase Formate Complex
- DOI: 10.2210/pdb6L9I/pdb
- Classification: METAL BINDING PROTEIN
- Organism(s): Companilactobacillus farciminis
- Expression System: Escherichia coli BL21(DE3)
- Mutation(s): No
- Deposited: 2019-11-10 Released: 2021-01-20
- Funding Organization(s): National Natural Science Foundation of China (NSFC)
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.79 Å
- R-Value Free: 0.229
- R-Value Work: 0.197
- R-Value Observed: 0.199
wwPDB Validation 3D Report Full Report
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Oxalate decarboxylase | A, B, C, D, E, F | 360 | Companilactobacillus farciminis | Mutation(s): 0 Gene Names: ABB44_10110, ABB45_10090 |  |
Find proteins for A0A0H4LHD1 (Lactobacillus farciminis) Explore A0A0H4LHD1 Go to UniProtKB: A0A0H4LHD1 | |||||
Protein Feature ViewExpand | |||||
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Small Molecules
| Ligands 2 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| MN Query on MN | A, B, C, D, E, F | MANGANESE (II) ION Mn WAEMQWOKJMHJLA-UHFFFAOYSA-N |  | Ligand Interaction | |
| FMT Query on FMT | A, B, C, D, E, F | FORMIC ACID C H2 O2 BDAGIHXWWSANSR-UHFFFAOYSA-N |  | Ligand Interaction | |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.79 Å
- R-Value Free: 0.229
- R-Value Work: 0.197
- R-Value Observed: 0.199
- Space Group: P 1 21 1
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 92.957 | α = 90 |
| b = 122.842 | β = 92.475 |
| c = 115.223 | γ = 90 |
| Software Name | Purpose |
|---|---|
| PHENIX | refinement |
| HKL-2000 | data reduction |
| HKL-2000 | data scaling |
| PHASER | phasing |
Entry History & Funding Information
Deposition Data
- Deposited Date: 2019-11-10
- Released Date: 2021-01-20 Deposition Author(s): Wu, F., Cheng, L.K., Wang, C.Y.
| Funding Organization | Location | Grant Number |
|---|---|---|
| National Natural Science Foundation of China (NSFC) | China | 31700625 |
