Biological Assembly 1  

 3D View: Structure | Ligand Interaction

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Hetero 9-mer - A3B3C3 

Biological assembly 1 assigned by authors and generated by PISA (software)

Macromolecule Content

• Total Structure Weight: 279.60 kDa 
• Atom Count: 15096 
• Residue Count: 1965 
• Unique protein chains: 2

6ZQJ

Cryo-EM structure of trimeric prME spike of Spondweni virus

• DOI: 10.2210/pdb6ZQJ/pdb
• EMDataResource: EMD-11366

• Classification: VIRUS
• Organism(s): Spondweni virus
• Mutation(s): No 


• Deposited: 2020-07-09 Released: 2021-01-20 
• Deposition Author(s): Renner, M., Dejnirattisai, W., Carrique, L., Serna Martin, I., Karia, D., Ilca, S.L., Ho, S.F., Kotecha, A., Keown, J.R., Mongkolsapaya, J., Screaton, G.R., Grimes, J.M.
• Funding Organization(s): Wellcome Trust

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Experimental Data Snapshot

• Method: ELECTRON MICROSCOPY
• Resolution: 4.20 Å
• Aggregation State: PARTICLE 
• Reconstruction Method: SINGLE PARTICLE 

Literature

A high resolution view of an adolescent flavivirus

Renner, M., Dejnirattisai, W., Carrique, L., Serna Martin, I., Karia, D., Ilca, S.L., Ho, S.F., Kotecha, A., Keown, J.R., Mongkolsapaya, J., Screaton, G.R., Grimes, J.M.

To be published.

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Genome polyprotein	A, D, G	505	Spondweni virus	Mutation(s): 0  EC: 3.4.21.91 (UniProt), 3.6.1.15 (UniProt), 3.6.4.13 (UniProt)
Find proteins for C8XPB6 (Spondweni virus) Explore C8XPB6  Go to UniProtKB:  C8XPB6

Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details	Image
prM	B, C, E, F, H, I	169	Spondweni virus	Mutation(s): 0  EC: 3.4.21.91 (UniProt), 3.6.1.15 (UniProt), 3.6.4.13 (UniProt)
Find proteins for C8XPB6 (Spondweni virus) Explore C8XPB6  Go to UniProtKB:  C8XPB6

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
NAG	B, E, H	2-acetamido-2-deoxy-beta-D-glucopyranose C8 H15 N O6 OVRNDRQMDRJTHS-FMDGEEDCSA-N

Experimental Data & Validation

Experimental Data

• Method: ELECTRON MICROSCOPY
• Resolution: 4.20 Å
• Aggregation State: PARTICLE 
• Reconstruction Method: SINGLE PARTICLE 

Structure Validation

Entry History & Funding Information

Deposition Data

• Deposited Date: 2020-07-09 
• Released Date: 2021-01-20 
Deposition Author(s): Renner, M., Dejnirattisai, W., Carrique, L., Serna Martin, I., Karia, D., Ilca, S.L., Ho, S.F., Kotecha, A., Keown, J.R., Mongkolsapaya, J., Screaton, G.R., Grimes, J.M.

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Funding Organization	Location	Grant Number
Wellcome Trust	United Kingdom	060208/Z/00/Z
Wellcome Trust	United Kingdom	093305/Z/10/Z
Wellcome Trust	United Kingdom	204703/Z/16/Z
Wellcome Trust	United Kingdom	200835/Z/16/Z
Wellcome Trust	United Kingdom	203141/Z/16/Z

Revision History 

• Version 1.0: 2021-01-20
  Type: Initial release