6WUR

Crystal structure of PRL-2 phosphatase C101D mutant in complex with the Bateman domain of CNNM3 magnesium transporter


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.88 Å
  • R-Value Free: 0.295 
  • R-Value Work: 0.238 
  • R-Value Observed: 0.241 

Starting Model: experimental
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wwPDB Validation   3D Report Full Report


This is version 1.1 of the entry. See complete history


Literature

Crystal structure of PRL phosphatase C104D mutant in complex with the Bateman domain of CNNM magnesium transporter

Kozlov, G.Funato, Y.Chen, S.Zhang, Z.Illes, K.Miki, H.Gehring, K.

(2020) J Biol Chem 


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Protein tyrosine phosphatase type IVA 2189Homo sapiensMutation(s): 1 
Gene Names: PTP4A2PRL2PTPCAAX2BM-008
EC: 3.1.3.48
UniProt & NIH Common Fund Data Resources
Find proteins for Q12974 (Homo sapiens)
Explore Q12974 
Go to UniProtKB:  Q12974
PHAROS:  Q12974
GTEx:  ENSG00000184007 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ12974
Sequence Annotations
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  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
Metal transporter CNNM3155Homo sapiensMutation(s): 0 
Gene Names: CNNM3ACDP3
UniProt & NIH Common Fund Data Resources
Find proteins for Q8NE01 (Homo sapiens)
Explore Q8NE01 
Go to UniProtKB:  Q8NE01
PHAROS:  Q8NE01
GTEx:  ENSG00000168763 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ8NE01
Sequence Annotations
Expand
  • Reference Sequence
Small Molecules
Ligands 1 Unique
IDChains Name / Formula / InChI Key2D Diagram3D Interactions
NA
Query on NA

Download Ideal Coordinates CCD File 
C [auth B]SODIUM ION
Na
FKNQFGJONOIPTF-UHFFFAOYSA-N
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.88 Å
  • R-Value Free: 0.295 
  • R-Value Work: 0.238 
  • R-Value Observed: 0.241 
  • Space Group: I 2 2 2
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 56.857α = 90
b = 124.544β = 90
c = 153.413γ = 90
Software Package:
Software NamePurpose
PHENIXrefinement
HKL-2000data reduction
HKL-2000data scaling
PHASERphasing

Structure Validation

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Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Natural Sciences and Engineering Research Council (NSERC, Canada)CanadaRPGIN2014-04686

Revision History  (Full details and data files)

  • Version 1.0: 2020-07-01
    Type: Initial release
  • Version 1.1: 2023-10-18
    Changes: Data collection, Database references, Refinement description