1JOG

Structure of HI0074 from Heamophilus Influenzae reveals the fold of a substrate binding domain of a nucleotidyltransferase

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
A	d1joga_	All alpha proteins	Four-helical up-and-down bundle	Nucleotidyltransferase substrate binding subunit/domain	Family 1 bi-partite nucleotidyltransferase subunit	Hypothetical protein HI0074	(Haemophilus influenzae ) [TaxId: 727 ],	SCOPe (2.08)
B	d1jogb_	All alpha proteins	Four-helical up-and-down bundle	Nucleotidyltransferase substrate binding subunit/domain	Family 1 bi-partite nucleotidyltransferase subunit	Hypothetical protein HI0074	(Haemophilus influenzae ) [TaxId: 727 ],	SCOPe (2.08)
C	d1jogc_	All alpha proteins	Four-helical up-and-down bundle	Nucleotidyltransferase substrate binding subunit/domain	Family 1 bi-partite nucleotidyltransferase subunit	Hypothetical protein HI0074	(Haemophilus influenzae ) [TaxId: 727 ],	SCOPe (2.08)
D	d1jogd_	All alpha proteins	Four-helical up-and-down bundle	Nucleotidyltransferase substrate binding subunit/domain	Family 1 bi-partite nucleotidyltransferase subunit	Hypothetical protein HI0074	(Haemophilus influenzae ) [TaxId: 727 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2 Family	Family 1 bi-partite nucleotidyltransferase subunit	8030273	4002311	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	HEPN domain-like	8042652	3000904	SCOP2 (2022-06-29)
B	SCOP2B Superfamily	HEPN domain-like	8042652	3000904	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	HEPN domain-like	8042652	3000904	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	HEPN domain-like	8042652	3000904	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	NTase_sub_bind	e1jogA1	A: alpha bundles	X: Four-helical up-and-down bundle	H: HEPN	T: Nucleotidyltransferase substrate binding subunit/domain	F: NTase_sub_bind	ECOD (1.6)
B	NTase_sub_bind	e1jogB1	A: alpha bundles	X: Four-helical up-and-down bundle	H: HEPN	T: Nucleotidyltransferase substrate binding subunit/domain	F: NTase_sub_bind	ECOD (1.6)
C	NTase_sub_bind	e1jogC1	A: alpha bundles	X: Four-helical up-and-down bundle	H: HEPN	T: Nucleotidyltransferase substrate binding subunit/domain	F: NTase_sub_bind	ECOD (1.6)
D	NTase_sub_bind	e1jogD1	A: alpha bundles	X: Four-helical up-and-down bundle	H: HEPN	T: Nucleotidyltransferase substrate binding subunit/domain	F: NTase_sub_bind	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	1.20.120.330	Mainly Alpha	Up-down Bundle	Four Helix Bundle (Hemerythrin (Met), subunit A)	Nucleotidyltransferases domain 2	CATH (4.3.0)
B	1.20.120.330	Mainly Alpha	Up-down Bundle	Four Helix Bundle (Hemerythrin (Met), subunit A)	Nucleotidyltransferases domain 2	CATH (4.3.0)
C	1.20.120.330	Mainly Alpha	Up-down Bundle	Four Helix Bundle (Hemerythrin (Met), subunit A)	Nucleotidyltransferases domain 2	CATH (4.3.0)
D	1.20.120.330	Mainly Alpha	Up-down Bundle	Four Helix Bundle (Hemerythrin (Met), subunit A)	Nucleotidyltransferases domain 2	CATH (4.3.0)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D	HYPOTHETICAL PROTEIN HI0074	endonuclease activity nuclease activity hydrolase activity, acting on ester bonds hydrolase activity catalytic activity binding nucleoside phosphate binding nucleotide binding heterocyclic compound binding small molecule binding	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D	IPR010235	Probable ribonuclease HepT	Family

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.