1ZK7
Crystal Structure of Tn501 MerA
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | Pyr_redox_dim | e1zk7A1 | A: a+b two layers | X: FAD-linked reductases, C-terminal domain-like | H: FAD/NAD-linked reduatases, dimerisation (C-terminal) domain (From Topology) | T: FAD/NAD-linked reduatases, dimerisation (C-terminal) domain | F: Pyr_redox_dim | ECOD (1.6) |
A | Pyr_redox_2_1 | e1zk7A3 | A: a/b three-layered sandwiches | X: Rossmann-like | H: Rossmann-related | T: FAD/NAD(P)-binding domain | F: Pyr_redox_2_1 | ECOD (1.6) |
A | Pyr_redox_2 | e1zk7A2 | A: a/b three-layered sandwiches | X: Rossmann-like | H: Rossmann-related | T: FAD/NAD(P)-binding domain | F: Pyr_redox_2 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 3.50.50.60 | Alpha Beta | 3-Layer(bba) Sandwich | FAD/NAD(P)-binding domain | FAD/NAD(P)-binding domain | CATH (4.3.0) |
A | 3.30.390.30 | Alpha Beta | 2-Layer Sandwich | Enolase-like | domain 1 | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF07992 | Pyridine nucleotide-disulphide oxidoreductase (Pyr_redox_2) | Pyridine nucleotide-disulphide oxidoreductase | This family includes both class I and class II oxidoreductases and also NADH oxidases and peroxidases. This domain is actually a small NADH binding domain within a larger FAD binding domain. | Domain | |
PF02852 | Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain (Pyr_redox_dim) | Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain | This family includes both class I and class II oxidoreductases and also NADH oxidases and peroxidases. | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR004099 | Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain | Domain | |
IPR017969 | Heavy-metal-associated, conserved site | Conserved Site | |
IPR006121 | Heavy metal-associated domain, HMA | Domain | |
IPR001100 | Pyridine nucleotide-disulphide oxidoreductase, class I | Family | |
IPR016156 | FAD/NAD-linked reductase, dimerisation domain superfamily | Homologous Superfamily | |
IPR036188 | FAD/NAD(P)-binding domain superfamily | Homologous Superfamily | |
IPR021179 | Mercury(II) reductase | Family | |
IPR023753 | FAD/NAD(P)-binding domain | Domain | |
IPR036163 | Heavy metal-associated domain superfamily | Homologous Superfamily | |
IPR012999 | Pyridine nucleotide-disulphide oxidoreductase, class I, active site | Active Site |
Structure Motif Annotation: Mechanism and Catalytic Site Atlas M-CSA Database Homepage
Chains | Enzyme Name | Description | Catalytic Residues |
---|---|---|---|
mercury(II) reductase M-CSA #277 | Mercuric reductase is responsible for detoxifying and volatilising mercury as Hg0. The catalytic centre is activated when in the diol form, rather than the disulfide. This preliminary, activating reduction step is proposed to involve another NADPH molecule. Both forms are present under physiological conditions and have been identified by structural data [PMID:16114877, PMID:2067577]. | Defined by 4 residues: CYS:A-42CYS:A-47CYS:A_2-464CYS:A_2-465 | EC: 1.16.1.1 (PDB Primary Data) |