2JNG

Solution structure of the CUL7-CPH domain from Homo Sapiens; Northeast Structural Genomics Consortium target HT1.

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
A	d2jnga1	All beta proteins	SH3-like barrel	Tudor/PWWP/MBT	CPH domain	Cullin-7	human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
A	d2jnga2	Artifacts	Tags	Tags	Tags	N-terminal Tags	human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2 Family	CPH domain	8022325	4001660	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	Tudor/PWWP/MBT domain-like	8034705	3000404	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	Cul7	e2jngA1	A: beta barrels	X: SH3	H: SH3	T: SH3	F: Cul7	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	2.30.30.30	Mainly Beta	Roll	SH3 type barrels.		CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A	PF11515	Mouse development and cellular proliferation protein Cullin-7 (Cul7)	Mouse development and cellular proliferation protein Cullin-7	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A	Cullin-7	ubiquitin ligase complex scaffold activity protein-macromolecule adaptor activity molecular adaptor activity ubiquitin protein ligase binding protein binding binding ubiquitin-like protein ligase binding enzyme binding	mitotic cell cycle process cytoskeleton-dependent cytokinesis mitotic cytokinesis cellular process cytokinesis cell division cell cycle mitotic cell cycle cell cycle process developmental process placenta development animal organ development anatomical structure development primary metabolic process mitotic cell cycle process cytoskeleton-dependent cytokinesis mitotic cytokinesis cellular process cytokinesis cell division cell cycle mitotic cell cycle cell cycle process developmental process placenta development animal organ development anatomical structure development primary metabolic process protein ubiquitination macromolecule modification metabolic process protein metabolic process macromolecule metabolic process post-translational protein modification protein modification process protein modification by small protein conjugation protein modification by small protein conjugation or removal catabolic process proteolysis involved in protein catabolic process protein catabolic process macromolecule catabolic process modification-dependent macromolecule catabolic process modification-dependent protein catabolic process proteolysis ubiquitin-dependent protein catabolic process cellular developmental process cell differentiation mesenchyme development mesenchymal cell differentiation tissue development epithelial to mesenchymal transition multicellular organismal process blood vessel morphogenesis tube development vasculogenesis vasculature development circulatory system development multicellular organism development anatomical structure morphogenesis tube morphogenesis blood vessel development system development regulation of biological process mitotic nuclear division regulation of cellular component organization regulation of cellular process regulation of cell cycle process organelle fission biological regulation regulation of mitotic nuclear division regulation of organelle organization cellular component organization regulation of mitotic cell cycle organelle organization nuclear division regulation of nuclear division cellular component organization or biogenesis regulation of cell cycle microtubule cytoskeleton organization microtubule-based process cytoskeleton organization positive regulation of nervous system development cell projection organization regulation of cell differentiation regulation of neurogenesis neuron projection development regulation of cell morphogenesis regulation of cell development positive regulation of developmental process cell projection morphogenesis neuron differentiation neuron projection morphogenesis regulation of dendrite morphogenesis positive regulation of cell projection organization regulation of cell projection organization positive regulation of cell development nervous system development positive regulation of cell morphogenesis generation of neurons regulation of dendrite development positive regulation of multicellular organismal process regulation of neuron projection development positive regulation of cellular component organization regulation of developmental process plasma membrane bounded cell projection morphogenesis positive regulation of biological process cell development cell morphogenesis regulation of nervous system development neurogenesis positive regulation of cell differentiation dendrite development positive regulation of neurogenesis regulation of multicellular organismal process regulation of anatomical structure morphogenesis positive regulation of cellular process regulation of multicellular organismal development plasma membrane bounded cell projection organization positive regulation of dendrite morphogenesis dendrite morphogenesis cell morphogenesis involved in neuron differentiation neuron development regulation of plasma membrane bounded cell projection organization Golgi organization endomembrane system organization	intracellular organelle centrosome microtubule organizing center cellular anatomical structure intracellular anatomical structure cytoskeleton organelle membraneless organelle intracellular membraneless organelle microtubule cytoskeleton cytoplasm cytosol membrane-bounded organelle Golgi apparatus intracellular organelle centrosome microtubule organizing center cellular anatomical structure intracellular anatomical structure cytoskeleton organelle membraneless organelle intracellular membraneless organelle microtubule cytoskeleton cytoplasm cytosol membrane-bounded organelle Golgi apparatus intracellular membrane-bounded organelle endomembrane system protein-containing complex 3M complex ubiquitin ligase complex catalytic complex nucleus nuclear protein-containing complex transferase complex anaphase-promoting complex cullin-RING ubiquitin ligase complex nuclear ubiquitin ligase complex intracellular protein-containing complex perinuclear region of cytoplasm Cul7-RING ubiquitin ligase complex

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A	IPR045093	Cullin	Family
A	IPR016024	Armadillo-type fold	Homologous Superfamily
A	IPR019559	Cullin protein, neddylation domain	Domain
A	IPR016158	Cullin homology domain	Domain
A	IPR014722	Large ribosomal subunit protein uL2, domain 2	Homologous Superfamily
A	IPR008979	Galactose-binding-like domain superfamily	Homologous Superfamily
A	IPR001373	Cullin, N-terminal	Domain
A	IPR036388	Winged helix-like DNA-binding domain superfamily	Homologous Superfamily
A	IPR036317	Cullin homology domain superfamily	Homologous Superfamily
A	IPR004939	APC10/DOC domain	Domain
A	IPR021097	CPH domain	Domain

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A	Pharos: Q14999	3-M syndrome renal cell carcinoma papillary renal cell carcinoma sarcomatoid renal cell carcinoma 3M syndrome 1 collecting duct carcinoma chromophobe renal cell carcinoma autism clear cell renal carcinoma diabetes mellitus Miller-McKusick-Malvaux-Syndrome (3M Syndrome) osteogenesis imperfecta renal carcinoma atypical teratoid rhabdoid tumor intellectual disability 3-M syndrome renal cell carcinoma papillary renal cell carcinoma sarcomatoid renal cell carcinoma 3M syndrome 1 collecting duct carcinoma chromophobe renal cell carcinoma autism clear cell renal carcinoma diabetes mellitus Miller-McKusick-Malvaux-Syndrome (3M Syndrome) osteogenesis imperfecta renal carcinoma atypical teratoid rhabdoid tumor intellectual disability osteosarcoma

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.