5C6V

Crystal structure of the rice Topless related protein 2 (TPR2) N-terminal domain (1-209) in complex with Arabidopsis NINJA peptide

External Resource: Annotation

Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	KOG0275_1st	e5c6vA1	A: alpha duplicates or obligate multimers	X: Lis-homology dimerization domain (From Topology)	H: Lis-homology dimerization domain (From Topology)	T: Lis-homology dimerization domain	F: KOG0275_1st	ECOD (1.6)
A	KOG0275_2nd	e5c6vA2	A: alpha superhelices	X: Repetitive alpha hairpins	H: Helical domain in TOPLESS related protein 2 (TPR2) (From Topology)	T: Helical domain in TOPLESS related protein 2 (TPR2)	F: KOG0275_2nd	ECOD (1.6)
A	zf_topless	e5c6vA3	A: few secondary structure elements	X: Zinc finger domain in TOPLESS related protein 2 (TPR2) (From Topology)	H: Zinc finger domain in TOPLESS related protein 2 (TPR2) (From Topology)	T: Zinc finger domain in TOPLESS related protein 2 (TPR2)	F: zf_topless	ECOD (1.6)
B	KOG0275_1st	e5c6vB3	A: alpha duplicates or obligate multimers	X: Lis-homology dimerization domain (From Topology)	H: Lis-homology dimerization domain (From Topology)	T: Lis-homology dimerization domain	F: KOG0275_1st	ECOD (1.6)
B	KOG0275_2nd	e5c6vB1	A: alpha superhelices	X: Repetitive alpha hairpins	H: Helical domain in TOPLESS related protein 2 (TPR2) (From Topology)	T: Helical domain in TOPLESS related protein 2 (TPR2)	F: KOG0275_2nd	ECOD (1.6)
B	zf_topless	e5c6vB2	A: few secondary structure elements	X: Zinc finger domain in TOPLESS related protein 2 (TPR2) (From Topology)	H: Zinc finger domain in TOPLESS related protein 2 (TPR2) (From Topology)	T: Zinc finger domain in TOPLESS related protein 2 (TPR2)	F: zf_topless	ECOD (1.6)
C	KOG0275_1st	e5c6vC1	A: alpha duplicates or obligate multimers	X: Lis-homology dimerization domain (From Topology)	H: Lis-homology dimerization domain (From Topology)	T: Lis-homology dimerization domain	F: KOG0275_1st	ECOD (1.6)
C	KOG0275_2nd	e5c6vC3	A: alpha superhelices	X: Repetitive alpha hairpins	H: Helical domain in TOPLESS related protein 2 (TPR2) (From Topology)	T: Helical domain in TOPLESS related protein 2 (TPR2)	F: KOG0275_2nd	ECOD (1.6)
C	zf_topless	e5c6vC2	A: few secondary structure elements	X: Zinc finger domain in TOPLESS related protein 2 (TPR2) (From Topology)	H: Zinc finger domain in TOPLESS related protein 2 (TPR2) (From Topology)	T: Zinc finger domain in TOPLESS related protein 2 (TPR2)	F: zf_topless	ECOD (1.6)
D	KOG0275_1st	e5c6vD1	A: alpha duplicates or obligate multimers	X: Lis-homology dimerization domain (From Topology)	H: Lis-homology dimerization domain (From Topology)	T: Lis-homology dimerization domain	F: KOG0275_1st	ECOD (1.6)
D	KOG0275_2nd	e5c6vD2	A: alpha superhelices	X: Repetitive alpha hairpins	H: Helical domain in TOPLESS related protein 2 (TPR2) (From Topology)	T: Helical domain in TOPLESS related protein 2 (TPR2)	F: KOG0275_2nd	ECOD (1.6)
D	zf_topless	e5c6vD3	A: few secondary structure elements	X: Zinc finger domain in TOPLESS related protein 2 (TPR2) (From Topology)	H: Zinc finger domain in TOPLESS related protein 2 (TPR2) (From Topology)	T: Zinc finger domain in TOPLESS related protein 2 (TPR2)	F: zf_topless	ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D	PF21889	TPR1-like, CTLH-containing domain (TPR1-like_2nd)	TPR1-like, CTLH-containing domain	This domain is found in Protein TPR1 from Oryza sativa, also known as Topless-related protein 2, and in similar sequences predominantly found in plants and some fungal species. TPR1 is thought to be a downstream regulator of strigolactones signalling ...	This domain is found in Protein TPR1 from Oryza sativa, also known as Topless-related protein 2, and in similar sequences predominantly found in plants and some fungal species. TPR1 is thought to be a downstream regulator of strigolactones signalling. This entry represents the second part of the N-terminal domain of TPR1, which contains the C-terminal to LisH (CTLH) motif, responsible for the binding to the auxin-responsive protein 12 (IAA12) [1-5]. This domain shows an all-alpha configuration.	Domain
A, B, C, D	PF17814	LisH-like dimerisation domain (LisH_TPL)	LisH-like dimerisation domain	TOPLESS (TPL) proteins have a highly conserved N-terminal domain containing a lissencephaly homologous (LisH) dimerization motif [1].	Domain
A, B, C, D	PF21359	TOPLESS, zinc finger domain (zf_topless)	TOPLESS, zinc finger domain	This is the zinc finger domain of TOPLESS and TOPLESS-related proteins, plant transcriptional co-repressors [1-3].	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D	ASPR2 protein	molecular sequestering activity protein sequestering activity	regulation of cellular process RNA metabolic process regulation of primary metabolic process nucleobase-containing compound metabolic process RNA biosynthetic process nucleic acid biosynthetic process DNA-templated transcription regulation of RNA metabolic process regulation of nucleobase-containing compound metabolic process regulation of RNA biosynthetic process regulation of biosynthetic process regulation of biological process biological regulation primary metabolic process regulation of cellular process RNA metabolic process regulation of primary metabolic process nucleobase-containing compound metabolic process RNA biosynthetic process nucleic acid biosynthetic process DNA-templated transcription regulation of RNA metabolic process regulation of nucleobase-containing compound metabolic process regulation of RNA biosynthetic process regulation of biosynthetic process regulation of biological process biological regulation primary metabolic process regulation of macromolecule metabolic process nucleobase-containing compound biosynthetic process gene expression macromolecule biosynthetic process nucleic acid metabolic process regulation of gene expression biosynthetic process cellular process metabolic process regulation of macromolecule biosynthetic process regulation of DNA-templated transcription macromolecule metabolic process regulation of metabolic process positive regulation of cell communication cellular response to stimulus positive regulation of response to biotic stimulus positive regulation of signal transduction response to stimulus pattern recognition receptor signaling pathway regulation of signal transduction response to biotic stimulus cell communication immune response-activating signaling pathway positive regulation of immune response regulation of immune system process signal transduction positive regulation of immune system process innate immune response-activating signaling pathway positive regulation of pattern recognition receptor signaling pathway immune response response to other organism regulation of innate immune response response to external stimulus regulation of response to stimulus defense response to other organism regulation of pattern recognition receptor signaling pathway positive regulation of defense response regulation of immune response activation of innate immune response activation of immune response regulation of defense response regulation of response to biotic stimulus biological process involved in interspecies interaction between organisms regulation of response to external stimulus signaling positive regulation of biological process positive regulation of response to stimulus positive regulation of response to external stimulus immune response-regulating signaling pathway regulation of response to stress response to stress innate immune response response to external biotic stimulus positive regulation of cellular process regulation of signaling positive regulation of innate immune response defense response defense response to symbiont immune system process regulation of cell communication positive regulation of signaling	cell periphery cellular anatomical structure plasma membrane membrane
E, F, G, H	AFP homolog 2	-	cellular response to stimulus regulation of cellular process response to lipid response to stimulus signaling hormone-mediated signaling pathway cell communication cellular response to endogenous stimulus cellular response to jasmonic acid stimulus response to hormone signal transduction cellular response to hormone stimulus regulation of biological process response to jasmonic acid cellular response to stimulus regulation of cellular process response to lipid response to stimulus signaling hormone-mediated signaling pathway cell communication cellular response to endogenous stimulus cellular response to jasmonic acid stimulus response to hormone signal transduction cellular response to hormone stimulus regulation of biological process response to jasmonic acid response to fatty acid response to endogenous stimulus biological regulation response to oxygen-containing compound jasmonic acid mediated signaling pathway cellular response to oxygen-containing compound cellular response to fatty acid cellular response to chemical stimulus response to chemical cellular response to lipid cellular process negative regulation of biological process RNA metabolic process regulation of primary metabolic process negative regulation of RNA biosynthetic process RNA biosynthetic process nucleobase-containing compound metabolic process DNA-templated transcription nucleic acid biosynthetic process regulation of RNA metabolic process negative regulation of cellular process negative regulation of nucleobase-containing compound metabolic process regulation of nucleobase-containing compound metabolic process regulation of RNA biosynthetic process negative regulation of macromolecule metabolic process regulation of biosynthetic process negative regulation of DNA-templated transcription negative regulation of metabolic process primary metabolic process regulation of macromolecule metabolic process nucleobase-containing compound biosynthetic process gene expression macromolecule biosynthetic process nucleic acid metabolic process regulation of gene expression biosynthetic process negative regulation of biosynthetic process negative regulation of macromolecule biosynthetic process metabolic process regulation of macromolecule biosynthetic process macromolecule metabolic process regulation of DNA-templated transcription regulation of metabolic process negative regulation of RNA metabolic process developmental process multicellular organismal process plant organ development regulation of developmental process leaf morphogenesis shoot system morphogenesis plant organ morphogenesis multicellular organism development anatomical structure morphogenesis regulation of shoot system morphogenesis anatomical structure development regulation of leaf morphogenesis leaf development shoot system development regulation of anatomical structure morphogenesis regulation of plant organ morphogenesis phyllome development system development defense response response to stress	membrane-bounded organelle intracellular organelle cellular anatomical structure intracellular anatomical structure organelle nucleus intracellular membrane-bounded organelle

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D	IPR054532	TPL/SMU1, LisH-like dimerisation domain	Domain
A, B, C, D	IPR019775	WD40 repeat, conserved site	Conserved Site
A, B, C, D	IPR036322	WD40-repeat-containing domain superfamily	Homologous Superfamily
A, B, C, D	IPR006595	CTLH, C-terminal LisH motif	Domain
A, B, C, D	IPR011047	Quinoprotein alcohol dehydrogenase-like superfamily	Homologous Superfamily
A, B, C, D	IPR048419	TOPLESS, zinc finger domain	Domain
A, B, C, D	IPR001680	WD40 repeat	Repeat
A, B, C, D	IPR054080	TPR1-like, CTLH-containing domain	Domain
A, B, C, D	IPR027728	Topless family	Family
A, B, C, D	IPR006594	LIS1 homology motif	Conserved Site
A, B, C, D	IPR015943	WD40/YVTN repeat-like-containing domain superfamily	Homologous Superfamily
E, F, G, H	IPR032308	Tify domain-binding domain	Domain
E, F, G, H	IPR031307	Ninja family	Family

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.