6CKU

Solution structure of the zebrafish granulin AaE

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2 Family	Granulin repeat	8079678	4003260	SCOP2 (2022-06-29)
A	SCOP2 Family	Granulin repeat	8092890	4003260	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	Granulin repeat	8079679	3000520	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	Granulin repeat	8092891	3000520	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	Granulin	e6ckuA1	A: few secondary structure elements	X: Granulin repeat (From Topology)	H: Granulin repeat (From Topology)	T: Granulin repeat	F: Granulin	ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A	PF00396	Granulin (Granulin)	Granulin	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A	Granulin-AaE	-	developmental process multicellular organism development multicellular organismal process hepaticobiliary system development gland development animal organ development anatomical structure development liver development system development regulation of macrophage activation regulation of defense response regulation of cellular process response to stimulus regulation of response to external stimulus developmental process multicellular organism development multicellular organismal process hepaticobiliary system development gland development animal organ development anatomical structure development liver development system development regulation of macrophage activation regulation of defense response regulation of cellular process response to stimulus regulation of response to external stimulus negative regulation of inflammatory response regulation of leukocyte activation negative regulation of biological process regulation of cell activation myeloid leukocyte activation leukocyte activation macrophage activation response to stress regulation of response to stress leukocyte activation involved in inflammatory response regulation of neuroinflammatory response negative regulation of cellular process regulation of immune system process regulation of multicellular organismal process regulation of biological process defense response negative regulation of response to stimulus cell activation biological regulation response to external stimulus regulation of inflammatory response negative regulation of microglial cell activation negative regulation of cell activation negative regulation of immune system process regulation of response to stimulus immune system process negative regulation of response to external stimulus negative regulation of defense response microglial cell activation cellular process inflammatory response glial cell activation regulation of microglial cell activation negative regulation of multicellular organismal process negative regulation of neuroinflammatory response neuroinflammatory response negative regulation of leukocyte activation negative regulation of macrophage activation axon extension axonogenesis cellular developmental process developmental growth cell projection organization plasma membrane bounded cell projection morphogenesis cell development neuron projection development cell growth cell morphogenesis cellular component organization neurogenesis cell projection morphogenesis neuron differentiation neuron projection morphogenesis cell differentiation cellular component organization or biogenesis neuron projection extension plasma membrane bounded cell projection organization developmental cell growth growth nervous system development axon development cell morphogenesis involved in neuron differentiation developmental growth involved in morphogenesis generation of neurons anatomical structure morphogenesis neuron development positive regulation of nervous system development regulation of developmental process positive regulation of biological process regulation of cell differentiation regulation of neurogenesis regulation of cell development regulation of nervous system development positive regulation of developmental process positive regulation of cell differentiation positive regulation of neurogenesis positive regulation of cellular process regulation of multicellular organismal development positive regulation of cell development positive regulation of multicellular organismal process cell differentiation in spinal cord central nervous system neuron differentiation spinal cord development central nervous system development ventral spinal cord development spinal cord motor neuron differentiation behavior locomotory behavior swimming behavior regulation of gliogenesis positive regulation of gliogenesis gliogenesis positive regulation of oligodendrocyte differentiation regulation of glial cell differentiation positive regulation of glial cell differentiation oligodendrocyte differentiation glial cell differentiation regulation of oligodendrocyte differentiation retina layer formation camera-type eye morphogenesis sensory organ development eye development retina development in camera-type eye visual system development neural retina development retina morphogenesis in camera-type eye eye morphogenesis sensory organ morphogenesis camera-type eye development anatomical structure formation involved in morphogenesis animal organ morphogenesis sensory system development photoreceptor cell differentiation eye photoreceptor cell differentiation photoreceptor cell development eye photoreceptor cell development posterior lateral line system development lateral line development posterior lateral line neuromast development tissue development lateral line system development posterior lateral line development mechanosensory lateral line system development neuromast development membrane organization protein localization cellular localization postsynapse organization skeletal muscle acetylcholine-gated channel clustering localization within membrane protein localization to membrane localization cell junction organization neuromuscular junction development receptor clustering cellular macromolecule localization macromolecule localization synapse organization postsynaptic membrane organization	cellular anatomical structure extracellular region cell periphery plasma membrane membrane

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A	IPR037277	Granulin superfamily	Homologous Superfamily
A	IPR000118	Granulin	Domain
A	IPR039036	Granulin family	Family

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.