6GYB

Cryo-EM structure of the bacteria-killing type IV secretion system core complex from Xanthomonas citri

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
GA [auth L]	SCOP2 Family	TrbI-like	8100211	4004140	SCOP2 (2022-06-29)
GA [auth L]	SCOP2 Superfamily	TrbI-like	8100212	3002141	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A [auth a]	TcpQ	e6gyba1	A: a+b complex topology	X: N0 domain in phage tail proteins and secretins-like	H: N0 domain in phage tail proteins and secretins (From Topology)	T: N0 domain in phage tail proteins and secretins	F: TcpQ	ECOD (1.6)
BA [auth G]	TcpQ	e6gybG1	A: a+b complex topology	X: N0 domain in phage tail proteins and secretins-like	H: N0 domain in phage tail proteins and secretins (From Topology)	T: N0 domain in phage tail proteins and secretins	F: TcpQ	ECOD (1.6)
D [auth d]	TcpQ	e6gybd1	A: a+b complex topology	X: N0 domain in phage tail proteins and secretins-like	H: N0 domain in phage tail proteins and secretins (From Topology)	T: N0 domain in phage tail proteins and secretins	F: TcpQ	ECOD (1.6)
EA [auth J]	TcpQ	e6gybJ1	A: a+b complex topology	X: N0 domain in phage tail proteins and secretins-like	H: N0 domain in phage tail proteins and secretins (From Topology)	T: N0 domain in phage tail proteins and secretins	F: TcpQ	ECOD (1.6)
G [auth g]	TcpQ	e6gybg1	A: a+b complex topology	X: N0 domain in phage tail proteins and secretins-like	H: N0 domain in phage tail proteins and secretins (From Topology)	T: N0 domain in phage tail proteins and secretins	F: TcpQ	ECOD (1.6)
HA [auth M]	TcpQ	e6gybM1	A: a+b complex topology	X: N0 domain in phage tail proteins and secretins-like	H: N0 domain in phage tail proteins and secretins (From Topology)	T: N0 domain in phage tail proteins and secretins	F: TcpQ	ECOD (1.6)
J [auth j]	TcpQ	e6gybj1	A: a+b complex topology	X: N0 domain in phage tail proteins and secretins-like	H: N0 domain in phage tail proteins and secretins (From Topology)	T: N0 domain in phage tail proteins and secretins	F: TcpQ	ECOD (1.6)
KA [auth P]	TcpQ	e6gybP1	A: a+b complex topology	X: N0 domain in phage tail proteins and secretins-like	H: N0 domain in phage tail proteins and secretins (From Topology)	T: N0 domain in phage tail proteins and secretins	F: TcpQ	ECOD (1.6)
M [auth m]	TcpQ	e6gybm1	A: a+b complex topology	X: N0 domain in phage tail proteins and secretins-like	H: N0 domain in phage tail proteins and secretins (From Topology)	T: N0 domain in phage tail proteins and secretins	F: TcpQ	ECOD (1.6)
NA [auth S]	TcpQ	e6gybS1	A: a+b complex topology	X: N0 domain in phage tail proteins and secretins-like	H: N0 domain in phage tail proteins and secretins (From Topology)	T: N0 domain in phage tail proteins and secretins	F: TcpQ	ECOD (1.6)
P [auth p]	TcpQ	e6gybp1	A: a+b complex topology	X: N0 domain in phage tail proteins and secretins-like	H: N0 domain in phage tail proteins and secretins (From Topology)	T: N0 domain in phage tail proteins and secretins	F: TcpQ	ECOD (1.6)
S [auth s]	TcpQ	e6gybs1	A: a+b complex topology	X: N0 domain in phage tail proteins and secretins-like	H: N0 domain in phage tail proteins and secretins (From Topology)	T: N0 domain in phage tail proteins and secretins	F: TcpQ	ECOD (1.6)
V [auth A]	TcpQ	e6gybA1	A: a+b complex topology	X: N0 domain in phage tail proteins and secretins-like	H: N0 domain in phage tail proteins and secretins (From Topology)	T: N0 domain in phage tail proteins and secretins	F: TcpQ	ECOD (1.6)
Y [auth D]	TcpQ	e6gybD1	A: a+b complex topology	X: N0 domain in phage tail proteins and secretins-like	H: N0 domain in phage tail proteins and secretins (From Topology)	T: N0 domain in phage tail proteins and secretins	F: TcpQ	ECOD (1.6)
B [auth b]	CagX_C	e6gybb1	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: CagX_C	ECOD (1.6)
B [auth b]	CagX_N	e6gybb2	A: beta sandwiches	X: TraO N-terminal domain (From Topology)	H: TraO N-terminal domain (From Topology)	T: TraO N-terminal domain	F: CagX_N	ECOD (1.6)
CA [auth H]	CagX_C	e6gybH1	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: CagX_C	ECOD (1.6)
CA [auth H]	CagX_N	e6gybH2	A: beta sandwiches	X: TraO N-terminal domain (From Topology)	H: TraO N-terminal domain (From Topology)	T: TraO N-terminal domain	F: CagX_N	ECOD (1.6)
E [auth e]	CagX_C	e6gybe1	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: CagX_C	ECOD (1.6)
E [auth e]	CagX_N	e6gybe2	A: beta sandwiches	X: TraO N-terminal domain (From Topology)	H: TraO N-terminal domain (From Topology)	T: TraO N-terminal domain	F: CagX_N	ECOD (1.6)
FA [auth K]	CagX_C	e6gybK1	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: CagX_C	ECOD (1.6)
FA [auth K]	CagX_N	e6gybK2	A: beta sandwiches	X: TraO N-terminal domain (From Topology)	H: TraO N-terminal domain (From Topology)	T: TraO N-terminal domain	F: CagX_N	ECOD (1.6)
H [auth h]	CagX_C	e6gybh1	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: CagX_C	ECOD (1.6)
H [auth h]	CagX_N	e6gybh2	A: beta sandwiches	X: TraO N-terminal domain (From Topology)	H: TraO N-terminal domain (From Topology)	T: TraO N-terminal domain	F: CagX_N	ECOD (1.6)
IA [auth N]	CagX_C	e6gybN2	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: CagX_C	ECOD (1.6)
IA [auth N]	CagX_N	e6gybN1	A: beta sandwiches	X: TraO N-terminal domain (From Topology)	H: TraO N-terminal domain (From Topology)	T: TraO N-terminal domain	F: CagX_N	ECOD (1.6)
K [auth k]	CagX_C	e6gybk1	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: CagX_C	ECOD (1.6)
K [auth k]	CagX_N	e6gybk2	A: beta sandwiches	X: TraO N-terminal domain (From Topology)	H: TraO N-terminal domain (From Topology)	T: TraO N-terminal domain	F: CagX_N	ECOD (1.6)
LA [auth Q]	CagX_C	e6gybQ1	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: CagX_C	ECOD (1.6)
LA [auth Q]	CagX_N	e6gybQ2	A: beta sandwiches	X: TraO N-terminal domain (From Topology)	H: TraO N-terminal domain (From Topology)	T: TraO N-terminal domain	F: CagX_N	ECOD (1.6)
N [auth n]	CagX_C	e6gybn1	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: CagX_C	ECOD (1.6)
N [auth n]	CagX_N	e6gybn2	A: beta sandwiches	X: TraO N-terminal domain (From Topology)	H: TraO N-terminal domain (From Topology)	T: TraO N-terminal domain	F: CagX_N	ECOD (1.6)
OA [auth T]	CagX_C	e6gybT1	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: CagX_C	ECOD (1.6)
OA [auth T]	CagX_N	e6gybT2	A: beta sandwiches	X: TraO N-terminal domain (From Topology)	H: TraO N-terminal domain (From Topology)	T: TraO N-terminal domain	F: CagX_N	ECOD (1.6)
Q [auth q]	CagX_C	e6gybq1	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: CagX_C	ECOD (1.6)
Q [auth q]	CagX_N	e6gybq2	A: beta sandwiches	X: TraO N-terminal domain (From Topology)	H: TraO N-terminal domain (From Topology)	T: TraO N-terminal domain	F: CagX_N	ECOD (1.6)
T [auth t]	CagX_C	e6gybt2	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: CagX_C	ECOD (1.6)
T [auth t]	CagX_N	e6gybt1	A: beta sandwiches	X: TraO N-terminal domain (From Topology)	H: TraO N-terminal domain (From Topology)	T: TraO N-terminal domain	F: CagX_N	ECOD (1.6)
W [auth B]	CagX_C	e6gybB1	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: CagX_C	ECOD (1.6)
W [auth B]	CagX_N	e6gybB2	A: beta sandwiches	X: TraO N-terminal domain (From Topology)	H: TraO N-terminal domain (From Topology)	T: TraO N-terminal domain	F: CagX_N	ECOD (1.6)
Z [auth E]	CagX_C	e6gybE2	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: CagX_C	ECOD (1.6)
Z [auth E]	CagX_N	e6gybE1	A: beta sandwiches	X: TraO N-terminal domain (From Topology)	H: TraO N-terminal domain (From Topology)	T: TraO N-terminal domain	F: CagX_N	ECOD (1.6)
AA [auth F]	TrbI	e6gybF1	A: beta barrels	X: CBF-like	H: TraF (From Topology)	T: TraF	F: TrbI	ECOD (1.6)
C [auth c]	TrbI	e6gybc1	A: beta barrels	X: CBF-like	H: TraF (From Topology)	T: TraF	F: TrbI	ECOD (1.6)
DA [auth I]	TrbI	e6gybI1	A: beta barrels	X: CBF-like	H: TraF (From Topology)	T: TraF	F: TrbI	ECOD (1.6)
F [auth f]	TrbI	e6gybf1	A: beta barrels	X: CBF-like	H: TraF (From Topology)	T: TraF	F: TrbI	ECOD (1.6)
GA [auth L]	TrbI	e6gybL1	A: beta barrels	X: CBF-like	H: TraF (From Topology)	T: TraF	F: TrbI	ECOD (1.6)
I [auth i]	TrbI	e6gybi1	A: beta barrels	X: CBF-like	H: TraF (From Topology)	T: TraF	F: TrbI	ECOD (1.6)
JA [auth O]	TrbI	e6gybO1	A: beta barrels	X: CBF-like	H: TraF (From Topology)	T: TraF	F: TrbI	ECOD (1.6)
L [auth l]	TrbI	e6gybl1	A: beta barrels	X: CBF-like	H: TraF (From Topology)	T: TraF	F: TrbI	ECOD (1.6)
MA [auth R]	TrbI	e6gybR1	A: beta barrels	X: CBF-like	H: TraF (From Topology)	T: TraF	F: TrbI	ECOD (1.6)
O [auth o]	TrbI	e6gybo1	A: beta barrels	X: CBF-like	H: TraF (From Topology)	T: TraF	F: TrbI	ECOD (1.6)
PA [auth U]	TrbI	e6gybU1	A: beta barrels	X: CBF-like	H: TraF (From Topology)	T: TraF	F: TrbI	ECOD (1.6)
R [auth r]	TrbI	e6gybr1	A: beta barrels	X: CBF-like	H: TraF (From Topology)	T: TraF	F: TrbI	ECOD (1.6)
U [auth u]	TrbI	e6gybu1	A: beta barrels	X: CBF-like	H: TraF (From Topology)	T: TraF	F: TrbI	ECOD (1.6)
X [auth C]	TrbI	e6gybC1	A: beta barrels	X: CBF-like	H: TraF (From Topology)	T: TraF	F: TrbI	ECOD (1.6)

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

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6GYB

Cryo-EM structure of the bacteria-killing type IV secretion system core complex from Xanthomonas citri

External Resource: Annotation

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Domain Annotation: ECOD Classification ECOD Database Homepage