6L9J

Structure of yeast Snf5 and Swi3 subcomplex

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
B	d6l9jb_	All alpha proteins	DNA/RNA-binding 3-helical bundle	Homeodomain-like	automated matches	automated matches	Baker's yeast (Saccharomyces cerevisiae S288C ) [TaxId: 559292 ],	SCOPe (2.08)
C	d6l9jc_	All alpha proteins	DNA/RNA-binding 3-helical bundle	Homeodomain-like	automated matches	automated matches	Baker's yeast (Saccharomyces cerevisiae S288C ) [TaxId: 559292 ],	SCOPe (2.08)
E	d6l9je_	All alpha proteins	DNA/RNA-binding 3-helical bundle	Homeodomain-like	automated matches	automated matches	Baker's yeast (Saccharomyces cerevisiae S288C ) [TaxId: 559292 ],	SCOPe (2.08)
F	d6l9jf_	All alpha proteins	DNA/RNA-binding 3-helical bundle	Homeodomain-like	automated matches	automated matches	Baker's yeast (Saccharomyces cerevisiae S288C ) [TaxId: 559292 ],	SCOPe (2.08)
H	d6l9jh_	All alpha proteins	DNA/RNA-binding 3-helical bundle	Homeodomain-like	automated matches	automated matches	Baker's yeast (Saccharomyces cerevisiae S288C ) [TaxId: 559292 ],	SCOPe (2.08)
I	d6l9ji_	All alpha proteins	DNA/RNA-binding 3-helical bundle	Homeodomain-like	automated matches	automated matches	Baker's yeast (Saccharomyces cerevisiae S288C ) [TaxId: 559292 ],	SCOPe (2.08)
K	d6l9jk_	All alpha proteins	DNA/RNA-binding 3-helical bundle	Homeodomain-like	automated matches	automated matches	Baker's yeast (Saccharomyces cerevisiae S288C ) [TaxId: 559292 ],	SCOPe (2.08)
L	d6l9jl_	All alpha proteins	DNA/RNA-binding 3-helical bundle	Homeodomain-like	automated matches	automated matches	Baker's yeast (Saccharomyces cerevisiae S288C ) [TaxId: 559292 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
B	SCOP2B Superfamily	Homeodomain-like	8056063	3000001	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Homeodomain-like	8056063	3000001	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	Homeodomain-like	8056063	3000001	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	Homeodomain-like	8056063	3000001	SCOP2B (2022-06-29)
H	SCOP2B Superfamily	Homeodomain-like	8056063	3000001	SCOP2B (2022-06-29)
I	SCOP2B Superfamily	Homeodomain-like	8056063	3000001	SCOP2B (2022-06-29)
K	SCOP2B Superfamily	Homeodomain-like	8056063	3000001	SCOP2B (2022-06-29)
L	SCOP2B Superfamily	Homeodomain-like	8056063	3000001	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
B	SWIRM	e6l9jB1	A: alpha arrays	X: HTH	H: HTH	T: tri-helical	F: SWIRM	ECOD (1.6)
C	SWIRM	e6l9jC1	A: alpha arrays	X: HTH	H: HTH	T: tri-helical	F: SWIRM	ECOD (1.6)
E	SWIRM	e6l9jE1	A: alpha arrays	X: HTH	H: HTH	T: tri-helical	F: SWIRM	ECOD (1.6)
F	SWIRM	e6l9jF1	A: alpha arrays	X: HTH	H: HTH	T: tri-helical	F: SWIRM	ECOD (1.6)
H	SWIRM	e6l9jH1	A: alpha arrays	X: HTH	H: HTH	T: tri-helical	F: SWIRM	ECOD (1.6)
I	SWIRM	e6l9jI1	A: alpha arrays	X: HTH	H: HTH	T: tri-helical	F: SWIRM	ECOD (1.6)
K	SWIRM	e6l9jK1	A: alpha arrays	X: HTH	H: HTH	T: tri-helical	F: SWIRM	ECOD (1.6)
L	SWIRM	e6l9jL1	A: alpha arrays	X: HTH	H: HTH	T: tri-helical	F: SWIRM	ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, D, G, J	PF04855	SNF5 / SMARCB1 / INI1 (SNF5)	SNF5 / SMARCB1 / INI1	-	Family
B, C, E, F, H B, C, E, F, H, I, K, L	PF04433	SWIRM domain (SWIRM)	SWIRM domain	This SWIRM domain is a small alpha-helical domain of about 85 amino acid residues found in chromosomal proteins. It contains a helix-turn helix motif and binds to DNA [1].	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, D, G, J	SWI/SNF chromatin-remodeling complex subunit SNF5	transcription factor binding RNA polymerase II-specific DNA-binding transcription factor binding protein binding binding DNA-binding transcription factor binding	positive regulation of invasive growth in response to glucose limitation regulation of growth regulation of biological process regulation of growth of unicellular organism as a thread of attached cells growth biological regulation positive regulation of biological process regulation of filamentous growth of a population of unicellular organisms positive regulation of growth of unicellular organism as a thread of attached cells filamentous growth positive regulation of filamentous growth of a population of unicellular organisms regulation of invasive growth in response to glucose limitation filamentous growth of a population of unicellular organisms positive regulation of growth regulation of filamentous growth positive regulation of invasive growth in response to glucose limitation regulation of growth regulation of biological process regulation of growth of unicellular organism as a thread of attached cells growth biological regulation positive regulation of biological process regulation of filamentous growth of a population of unicellular organisms positive regulation of growth of unicellular organism as a thread of attached cells filamentous growth positive regulation of filamentous growth of a population of unicellular organisms regulation of invasive growth in response to glucose limitation filamentous growth of a population of unicellular organisms positive regulation of growth regulation of filamentous growth invasive growth in response to glucose limitation positive regulation of filamentous growth growth of unicellular organism as a thread of attached cells invasive filamentous growth cellular response to stimulus double-strand break repair response to stimulus DNA recombination primary metabolic process DNA metabolic process nucleic acid metabolic process nucleobase-containing compound metabolic process cellular response to stress DNA damage response response to stress recombinational repair metabolic process cellular process macromolecule metabolic process double-strand break repair via homologous recombination DNA repair regulation of cellular process RNA metabolic process regulation of primary metabolic process RNA biosynthetic process nucleic acid biosynthetic process DNA-templated transcription regulation of RNA metabolic process transcription by RNA polymerase II regulation of nucleobase-containing compound metabolic process regulation of RNA biosynthetic process regulation of transcription by RNA polymerase II regulation of biosynthetic process regulation of macromolecule metabolic process nucleobase-containing compound biosynthetic process gene expression macromolecule biosynthetic process regulation of gene expression biosynthetic process regulation of macromolecule biosynthetic process regulation of DNA-templated transcription regulation of metabolic process positive regulation of DNA-templated transcription positive regulation of macromolecule biosynthetic process positive regulation of metabolic process positive regulation of biosynthetic process positive regulation of macromolecule metabolic process positive regulation of cellular process positive regulation of nucleobase-containing compound metabolic process positive regulation of transcription by RNA polymerase II positive regulation of RNA metabolic process positive regulation of RNA biosynthetic process carbon catabolite regulation of transcription cellular response to nutrient levels response to chemical carbon catabolite activation of transcription response to nutrient levels response to nutrient cellular response to chemical stimulus cellular response to nutrient cellular component organization chromatin organization chromatin remodeling cellular component organization or biogenesis	membrane-bounded organelle intracellular anatomical structure nucleus membrane-enclosed lumen nuclear chromosome intracellular membraneless organelle chromosome intracellular membrane-bounded organelle intracellular organelle lumen intracellular organelle cellular anatomical structure organelle lumen organelle membraneless organelle membrane-bounded organelle intracellular anatomical structure nucleus membrane-enclosed lumen nuclear chromosome intracellular membraneless organelle chromosome intracellular membrane-bounded organelle intracellular organelle lumen intracellular organelle cellular anatomical structure organelle lumen organelle membraneless organelle nuclear lumen cytoplasm cytosol SWI/SNF complex ATPase complex protein-containing complex catalytic complex nuclear protein-containing complex chromatin SWI/SNF superfamily-type complex
B, C, E, F, H B, C, E, F, H, I, K, L	SWI/SNF complex subunit SWI3	DNA binding binding nucleic acid binding protein binding histone binding	regulation of cellular process positive regulation of DNA-templated transcription positive regulation of biological process RNA metabolic process positive regulation of macromolecule biosynthetic process regulation of primary metabolic process nucleobase-containing compound metabolic process RNA biosynthetic process nucleic acid biosynthetic process positive regulation of metabolic process DNA-templated transcription regulation of RNA metabolic process positive regulation of biosynthetic process positive regulation of macromolecule metabolic process regulation of cellular process positive regulation of DNA-templated transcription positive regulation of biological process RNA metabolic process positive regulation of macromolecule biosynthetic process regulation of primary metabolic process nucleobase-containing compound metabolic process RNA biosynthetic process nucleic acid biosynthetic process positive regulation of metabolic process DNA-templated transcription regulation of RNA metabolic process positive regulation of biosynthetic process positive regulation of macromolecule metabolic process regulation of nucleobase-containing compound metabolic process positive regulation of cellular process regulation of RNA biosynthetic process regulation of biosynthetic process regulation of biological process positive regulation of nucleobase-containing compound metabolic process biological regulation primary metabolic process regulation of macromolecule metabolic process nucleobase-containing compound biosynthetic process gene expression macromolecule biosynthetic process nucleic acid metabolic process positive regulation of RNA metabolic process regulation of gene expression biosynthetic process positive regulation of RNA biosynthetic process cellular process metabolic process regulation of macromolecule biosynthetic process macromolecule metabolic process regulation of DNA-templated transcription regulation of metabolic process developmental process regulation of developmental process regulation of reproductive process reproductive process reproductive process in single-celled organism positive regulation of mating type switching regulation of mating type switching developmental process involved in reproduction mating type switching positive regulation of developmental process sex determination mating type determination positive regulation of reproductive process transcription by RNA polymerase II regulation of transcription by RNA polymerase II positive regulation of transcription by RNA polymerase II cellular component organization chromatin organization chromatin remodeling cellular component organization or biogenesis	cellular anatomical structure intracellular anatomical structure cytoplasm cytosol membrane-bounded organelle SWI/SNF complex ATPase complex protein-containing complex catalytic complex nucleus nuclear protein-containing complex intracellular membraneless organelle chromatin chromosome cellular anatomical structure intracellular anatomical structure cytoplasm cytosol membrane-bounded organelle SWI/SNF complex ATPase complex protein-containing complex catalytic complex nucleus nuclear protein-containing complex intracellular membraneless organelle chromatin chromosome intracellular membrane-bounded organelle intracellular organelle organelle membraneless organelle SWI/SNF superfamily-type complex

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, D, G, J	IPR006939	SNF5/SMARCB1/INI1	Family
B, C, E, F, H B, C, E, F, H, I, K, L	IPR009057	Homedomain-like superfamily	Homologous Superfamily
B, C, E, F, H B, C, E, F, H, I, K, L	IPR036388	Winged helix-like DNA-binding domain superfamily	Homologous Superfamily
B, C, E, F, H B, C, E, F, H, I, K, L	IPR017884	SANT domain	Domain
B, C, E, F, H B, C, E, F, H, I, K, L	IPR001005	SANT/Myb domain	Domain
B, C, E, F, H B, C, E, F, H, I, K, L	IPR007526	SWIRM domain	Domain
B, C, E, F, H B, C, E, F, H, I, K, L	IPR032451	SMARCC, C-terminal	Domain

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.