1I9F
STRUCTURAL CHARACTERIZATION OF THE COMPLEX OF THE REV RESPONSE ELEMENT RNA WITH A SELECTED PEPTIDE
SOLUTION NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 2D NOESY | 1.6 mM RNA/peptide | 90% H2O/10% D2O, 20 mM sodium phosphate, 100 mM sodium chloride, 0.1 mM EDTA, pH 6.5 | 20mM sodium phosphate, 100 mM sodium chloride | 6.5 | 1 atm | 298 | |
2 | 3D_13C-separated_NOESY | 1.6 mM RNA/peptide | 90% H2O/10% D2O, 20 mM sodium phosphate, 100 mM sodium chloride, 0.1 mM EDTA, pH 6.5 | 20mM sodium phosphate, 100 mM sodium chloride | 6.5 | 1 atm | 298 | |
3 | 3D_15N-separated_NOESY | 1.6 mM RNA/peptide | 90% H2O/10% D2O, 20 mM sodium phosphate, 100 mM sodium chloride, 0.1 mM EDTA, pH 6.5 | 20mM sodium phosphate, 100 mM sodium chloride | 6.5 | 1 atm | 298 | |
4 | DQF-COSY | 1.6 mM RNA/peptide | 90% H2O/10% D2O, 20 mM sodium phosphate, 100 mM sodium chloride, 0.1 mM EDTA, pH 6.5 | 20mM sodium phosphate, 100 mM sodium chloride | 6.5 | 1 atm | 298 | |
5 | HNCA-J | 1.6 mM RNA/peptide | 90% H2O/10% D2O, 20 mM sodium phosphate, 100 mM sodium chloride, 0.1 mM EDTA, pH 6.5 | 20mM sodium phosphate, 100 mM sodium chloride | 6.5 | 1 atm | 298 |
NMR Spectrometer Information | |||
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Spectrometer | Manufacturer | Model | Field Strength |
1 | 500 | ||
2 | 600 |
NMR Ensemble Information | |
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Conformer Selection Criteria | |
Conformers Calculated Total Number | 20 |
Conformers Submitted Total Number | 7 |
Representative Model | (fewest violations, lowest energy) |
Computation: NMR Software | ||||
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# | Classification | Version | Software Name | Author |
1 | data analysis | XEASY | ||
2 | data analysis | Felix |