1KYJ
Tumor Associated Mucin Motif from CD43 protein
SOLUTION NMR
| NMR Experiment | ||||||||
|---|---|---|---|---|---|---|---|---|
| Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
| 1 | 2D NOESY | 10 mM glycopeptide | 90% H2O/10% D2O | 4.5 | 1 atm | 291 | ||
| 2 | 3D_TOCSY_NOESY | 10 mM glycopeptide | 90% H2O/10% D2O | 4.5 | 1 atm | 291 | ||
| NMR Spectrometer Information | |||
|---|---|---|---|
| Spectrometer | Manufacturer | Model | Field Strength |
| 1 | Varian | INOVA | 600 |
| 2 | Varian | INOVA | 800 |
| NMR Refinement | ||
|---|---|---|
| Method | Details | Software |
| VNMR, NMRPIPE, X-PLOR, Torsion Space Simulated Annealing | refinement based on 107 NOE's 11 J coupling restraints and 3 dihedral restraints. See citation for full description. | VNMR |
| NMR Ensemble Information | |
|---|---|
| Conformer Selection Criteria | No NOE violations greter than 0.15A, no coupling violation greater than 0.5 Hz, no angle violation greater than 5 deg. |
| Conformers Calculated Total Number | 200 |
| Conformers Submitted Total Number | 59 |
| Representative Model | 1 (closest to the average) |
| Additional NMR Experimental Information | |
|---|---|
| Details | Coordinates are given only for the experimentally defined glycopeptide core residues. These are comprised of the amino acid units in the peptide and the N-acetyl-galactosamine. Coordinates for the terminal galactose and sialic acid of each of the glycans are not included. |
| Computation: NMR Software | ||||
|---|---|---|---|---|
| # | Classification | Version | Software Name | Author |
| 1 | collection | VNMR | 6.1 | Varian Inc. |
| 2 | data analysis | VNMR | 6.1 | Varian Inc. |
| 3 | data analysis | NMRPipe | 2.1 | Delaglio |
| 4 | refinement | X-PLOR | 98 | Brunger/MSI |
