1N88
NMR structure of the ribosomal protein L23 from Thermus thermophilus.
SOLUTION NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 3D_13C-separated_NOESY | 0.8mM L23 U-15N,13C; 50mM KH2PO4, pH=5.1, 200mM LiCl2 | 90% H2O/10% D2O | 0.2M LiCl2 | 5.1 | 1 atm | 308 | |
2 | CBCANH,CBCA(CO)NH,HNCO,HNCA,HN(CO)CA,C(CO)NH,HC(CO)NH,HCCH-COSY,HCCH-TOCSY | 0.8mM L23 U-15N,13C; 50mM KH2PO4, pH=5.1, 200mM LiCl2 | 90% H2O/10% D2O | 0.2M LiCl2 | 5.1 | 1 atm | 308 | |
3 | 3D_15N-separated_NOESY | 0.8mM L23 U-15N; 50mM KH2PO4, pH=5.1, 200mM LiCl2 | 90% H2O/10% D2O | 0.2M LiCl2 | 5.1 | 1 atm | 308 | |
4 | 2D 15N-HSQC,3D 15N-DIPSI-HSQC | 0.8mM L23 U-15N; 50mM KH2PO4, pH=5.1, 200mM LiCl2 | 90% H2O/10% D2O | 0.2M LiCl2 | 5.1 | 1 atm | 308 | |
5 | 2D 1H-DQF-COSY, 2D 1H-clean-TOCSY, 2D 1H-NOESY | 0.8mM L23 U-15N; 50mM KH2PO4, pH=5.1, 200mM LiCl2 | 90% H2O/10% D2O | 0.2M LiCl2 | 5.1 | 1 atm | 308 |
NMR Spectrometer Information | |||
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Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | AVANCE | 600 |
2 | Bruker | AVANCE | 500 |
3 | Varian | INOVA | 800 |
NMR Refinement | ||
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Method | Details | Software |
simulated annealing, molecular dynamics, energy minimization | Distance restraints: 1660 Dihedral angle restraints: 61 | XwinNMR |
NMR Ensemble Information | |
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Conformer Selection Criteria | accept.inp (XPLOR), low energy and good Ramachandran behaviour. |
Conformers Calculated Total Number | 100 |
Conformers Submitted Total Number | 29 |
Representative Model | 1 (lowest energy) |
Additional NMR Experimental Information | |
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Details | The structure was determined using triple-resonance NMR spectroscopy. |
Computation: NMR Software | ||||
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# | Classification | Version | Software Name | Author |
1 | collection | XwinNMR | 2.6 | Bruker Biospin |
2 | processing | XwinNMR | 2.6 | Bruker Biospin |
3 | processing | NMRPipe | 2.1 | Delaglio, F. |
4 | data analysis | ANSIG | 1.02 | Helgstrand, M. |
5 | refinement | X-PLOR | 3.851 | |
6 | data analysis | AQUA | 3.2 | Laskowski, R.A. |
7 | data analysis | TALOS | 1999.019.15.47 | Cornilescu, G. |
8 | data analysis | MOLMOL | 2K.1 | Koradi, R. |