1OZ8
Intramolecular higher-order packing of parallel quadruplexes comprising a G:G:G:G tetrad and a G(:A):G(:A):G(:A):G heptad of GGA triplet repeat DNA
SOLUTION NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 2D NOESY | 1mM DNA; 10mM sodium phosphate buffer; 30mM KCl | 95% H2O/5% D2O | 6.5 | ambient | 275 | ||
2 | 2D NOESY | 1mM DNA; 10mM sodium phosphate buffer; 30mM KCl | 100% D2O | 6.5 | ambient | 298 | ||
3 | 2D TOCSY | 1mM DNA; 10mM sodium phosphate buffer; 30mM KCl | 100% D2O | 6.5 | ambient | 298 | ||
4 | DQF-COSY | 1mM DNA; 10mM sodium phosphate buffer; 30mM KCl | 100% D2O | 6.5 | ambient | 298 |
NMR Spectrometer Information | |||
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Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | DRX | 800 |
2 | Bruker | DRX | 600 |
NMR Refinement | ||
---|---|---|
Method | Details | Software |
simulated annealing | X-PLOR |
NMR Ensemble Information | |
---|---|
Conformer Selection Criteria | structures with the lowest energy |
Conformers Calculated Total Number | 100 |
Conformers Submitted Total Number | 20 |
Representative Model | 1 (lowest energy) |
Computation: NMR Software | ||||
---|---|---|---|---|
# | Classification | Version | Software Name | Author |
1 | structure solution | X-PLOR | 3.851 | Brunger |
2 | refinement | X-PLOR | 3.851 |