1YBJ
Structural and Dynamics studies of both apo and holo forms of the hemophore HasA
SOLUTION NMR
NMR Experiment | ||||||||
---|---|---|---|---|---|---|---|---|
Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | HNHA | 1.8mM HasA 15N | 20mM sodium phosphate buffer, pH5.6; 90% H2O/10% D20 | 20mM sodium phosphate buffer | 5.6 | ambient | 303 | |
2 | 3D_15N-separated_NOESY | 1.9mM HasA 15N,13C | 20mM sodium phosphate buffer, pH5.6; 90% H2O/10% D20 | 20mM sodium phosphate buffer | 5.6 | ambient | 303 | |
3 | 3D_13C-separated_NOESY | 1.9mM HasA 15N,13C | 20mM sodium phosphate buffer, pH5.6; 90% H2O/10% D20 | 20mM sodium phosphate buffer | 5.6 | ambient | 303 |
NMR Spectrometer Information | |||
---|---|---|---|
Spectrometer | Manufacturer | Model | Field Strength |
1 | Varian | INOVA | 750 |
2 | Varian | INOVA | 500 |
NMR Refinement | ||
---|---|---|
Method | Details | Software |
simulated annealing | Structures are based on a total of 3537 distance restraints (where 3145 were unambiguous and 392 ambiguous),111 phi torsion angles and 34 hydrogen bonds. | VNMR |
NMR Ensemble Information | |
---|---|
Conformer Selection Criteria | structures with the lowest energy |
Conformers Calculated Total Number | 20 |
Conformers Submitted Total Number | 10 |
Representative Model | 10 (lowest energy) |
Additional NMR Experimental Information | |
---|---|
Details | H-bond constraints according to the amide proton-deuterium exchange measurements (15N HSQC experiments) |
Computation: NMR Software | ||||
---|---|---|---|---|
# | Classification | Version | Software Name | Author |
1 | collection | VNMR | 6.1c | |
2 | processing | NMRPipe | F. Delaglio, S. Grzesiek, G. W. Vuister, G. Zhu, J. Pfeifer and A. Bax | |
3 | data analysis | XEASY | 1.3.13 | Bartels, C., Xia, T.H., Billeter, M., Guntert, P., Wuthrich, K. |
4 | structure solution | ARIA/CNS | 2.0alpha | Linge, J., Nilges, M., Habeck, M., Rieping, W. |
5 | refinement | ARIA/CNS | 2.0alpha | Linge, J., Nilges, M., Habeck, M., Rieping, W. |