1AUL
SOLUTION STRUCTURE OF A HIGHLY STABLE DNA DUPLEX CONJUGATED TO A MINOR GROOVE BINDER, NMR, MINIMIZED AVERAGE STRUCTURE
SOLUTION NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | NOESY | 6.0 | 293.15 | |||||
2 | DQF-COSY | 6.0 | 293.15 | |||||
3 | HETEROTOCSY | 6.0 | 293.15 | |||||
4 | TOCSY | 6.0 | 293.15 |
NMR Spectrometer Information | |||
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Spectrometer | Manufacturer | Model | Field Strength |
1 | Varian | UNITYPLUS | 600 |
NMR Refinement | ||
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Method | Details | Software |
RESTRAINED MOLECULAR DYNAMICS/RELAXATION MATRIX REFINEMENT | CANONICAL B-TYPE STRUCTURE USED IN RESTRAINED MOLECULAR DYNAMICS CALCULATIONS GENERATING SIX STRUCTURES FROM DIFFERENT RANDOM NUMBER SEEDS. THE SIX STRUCTURES WERE SUBJECTED TO RELAXATION MATRIX REFINEMENT TO GENERATE THE SIX FINAL STRUCTURES. THESE SIX STRUCTURES WERE AVERAGED AND MINIMIZED TO GIVE THE FINAL STRUCTURE PRESENTED HERE. | X-PLOR |
NMR Ensemble Information | |
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Conformer Selection Criteria | LEAST RESTRAINT VIOLATION |
Conformers Calculated Total Number | 6 |
Conformers Submitted Total Number | 1 |
Computation: NMR Software | ||||
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# | Classification | Version | Software Name | Author |
1 | refinement | X-PLOR | BRUNGER | |
2 | structure solution | X-PLOR | 3.1 |