1MWQ
Structure of HI0828, a Hypothetical Protein from Haemophilus influenzae with a Putative Active-Site Phosphohistidine
X-RAY DIFFRACTION
Crystallization
Crystalization Experiments | ||||
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ID | Method | pH | Temperature | Details |
1 | VAPOR DIFFUSION, HANGING DROP | 5.5 | 295 | PEG4000, sodium cacodylate, sodium chloride, zinc acetate, dioxane, pH 5.5, VAPOR DIFFUSION, HANGING DROP, temperature 295K |
Crystal Properties | |
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Matthews coefficient | Solvent content |
2 | 45.19 |
Crystal Data
Unit Cell | |
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Length ( Å ) | Angle ( ˚ ) |
a = 42.476 | α = 90 |
b = 63.317 | β = 90 |
c = 75.465 | γ = 90 |
Symmetry | |
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Space Group | P 21 21 21 |
Diffraction
Diffraction Experiment | ||||||||||||||
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ID # | Crystal ID | Scattering Type | Data Collection Temperature | Detector | Detector Type | Details | Collection Date | Monochromator | Protocol | |||||
1 | 1 | x-ray | 100 | CCD | ADSC QUANTUM 210 | 2001-09-23 | M | MAD |
Radiation Source | |||||
---|---|---|---|---|---|
ID # | Source | Type | Wavelength List | Synchrotron Site | Beamline |
1 | SYNCHROTRON | APS BEAMLINE 17-ID | 0.9793, 0.9795, 0.9664, 0.9832 | APS | 17-ID |
Data Collection
Overall | |||||||||||||||||||
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ID # | Resolution (High) | Resolution (Low) | Percent Possible (Observed) | R Sym I (Observed) | Net I Over Average Sigma (I) | Redundancy | Number Reflections (All) | Number Reflections (Observed) | Observed Criterion Sigma (F) | Observed Criterion Sigma (I) | B (Isotropic) From Wilson Plot | ||||||||
1 | 0.99 | 19.45 | 94.2 | 0.063 | 16.7 | 4.76 | 206507 | 206417 |
Highest Resolution Shell | |||||||||||||||||||
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ID # | Resolution (High) | Resolution (Low) | Percent Possible (All) | Percent Possible (Observed) | R-Sym I (Observed) | Mean I Over Sigma (Observed) | Redundancy | Number Unique Reflections (All) | |||||||||||
1 | 0.99 | 1 | 55.7 | 0.3486 | 2.4 | 0.87 | 3599 |
Refinement
Statistics | |||||||||||||||||||
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Diffraction ID | Structure Solution Method | Cross Validation method | Resolution (High) | Resolution (Low) | Number Reflections (All) | Number Reflections (Observed) | Number Reflections (R-Free) | Percent Reflections (Observed) | R-Factor (All) | R-Factor (Observed) | R-Work (Depositor) | R-Work (DCC) | R-Free (Depositor) | R-Free (DCC) | R-Free Selection Details | Mean Isotropic B | |||
X-RAY DIFFRACTION | MAD | FREE R | 0.99 | 15 | 107935 | 107935 | 5403 | 95 | 0.1087 | 0.1087 | 0.1078 | 0.1112 | 0.1319 | 0.123 | RANDOM |
Coordinate Error | ||
---|---|---|
Structure Solution Method | Refinement High Resolution | Refinement Low Resolution |
25 | 1497 | 1916.09 |
RMS Deviations | |
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Key | Refinement Restraint Deviation |
s_non_zero_chiral_vol | 0.11 |
s_approx_iso_adps | 0.107 |
s_zero_chiral_vol | 0.094 |
s_similar_adp_cmpnt | 0.049 |
s_anti_bump_dis_restr | 0.036 |
s_angle_d | 0.032 |
s_from_restr_planes | 0.0269 |
s_bond_d | 0.014 |
s_rigid_bond_adp_cmpnt | 0.006 |
s_similar_dist |
Non-Hydrogen Atoms Used in Refinement | |
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Non-Hydrogen Atoms | Number |
Protein Atoms | 1579 |
Nucleic Acid Atoms | |
Solvent Atoms | 329 |
Heterogen Atoms | 38 |
Software
Software | |
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Software Name | Purpose |
SHELXL-97 | refinement |
SCALEPACK | data scaling |
XPREP | data reduction |
SOLVE | phasing |
RESOLVE | model building |
CNS | refinement |
SHELX | model building |
DENZO | data reduction |
RESOLVE | phasing |
CNS | phasing |
SHELX | phasing |