1R4G
Solution structure of the Sendai virus protein X C-subdomain
SOLUTION NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 3D_15N-separated_NOESY | 1.2-1.5mM 15N/13C Protein X, 50mM potassium phosphate buffer, 0.5M NaCl, 10mM DTT, antiprotease cocktail | 90% H2O/10% D2O | 0.5M NaCl | 6 | ambient | 298 | |
2 | 3D_13C-separated_NOESY | 1.2-1.5mM 15N/13C Protein X, 50mM potassium phosphate buffer, 0.5M NaCl, 10mM DTT, antiprotease cocktail | 90% H2O/10% D2O | 0.5M NaCl | 6 | ambient | 298 | |
3 | 3D HNCO type experiments | 1mM 15N/13C Protein X, 5% C12/E6/hexanol, 50mM potassium phosphate buffer, 0.5M NaCl, 10mM DTT | 90% H2O/10% D2O |
NMR Spectrometer Information | |||
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Spectrometer | Manufacturer | Model | Field Strength |
1 | Varian | INOVA | 800 |
2 | Varian | INOVA | 600 |
NMR Refinement | ||
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Method | Details | Software |
simulated annealing | Discover |
NMR Ensemble Information | |
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Conformer Selection Criteria | structures with the lowest energy |
Conformers Calculated Total Number | 100 |
Conformers Submitted Total Number | 20 |
Representative Model | 1 (lowest energy) |
Additional NMR Experimental Information | |
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Details | Sample 2 was used to measure the three different types of residual dipolar couplings used for structure refinement. |
Computation: NMR Software | ||||
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# | Classification | Version | Software Name | Author |
1 | structure solution | Discover | 2.98 | Accelrys, Inc. |
2 | refinement | SCULPTOR | hus & blackledge |