2JRE
C60-1, a PDZ domain designed using statistical coupling analysis
SOLUTION NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 3D 1H-15N NOESY | 1 mM [U-100% 13C; U-100% 15N] protein, 50 mM sodium chloride, 25 mM sodium phosphate, 0.02 % sodium azide | 90% H2O/10% D2O | 6.5 | 288 | |||
2 | 3D 1H-13C NOESY | 1 mM [U-100% 13C; U-100% 15N] protein, 50 mM sodium chloride, 25 mM sodium phosphate, 0.02 % sodium azide | 100% D2O | 6.5 | 288 | |||
3 | 2D 1H-15N HSQC | 1 mM [U-100% 13C; U-100% 15N] protein, 50 mM sodium chloride, 25 mM sodium phosphate, 0.02 % sodium azide | 90% H2O/10% D2O | 6.5 | 288 | |||
4 | 2D 1H-13C HSQC | 1 mM [U-10% 13C] protein, 50 mM sodium chloride, 25 mM sodium phosphate, 0.02 % sodium azide | 90% H2O/10% D2O | 6.5 | 288 | |||
5 | 3D CBCA(CO)NH | 1 mM [U-100% 13C; U-100% 15N] protein, 50 mM sodium chloride, 25 mM sodium phosphate, 0.02 % sodium azide | 90% H2O/10% D2O | 6.5 | 288 | |||
6 | 3D HNCACB | 1 mM [U-100% 13C; U-100% 15N] protein, 50 mM sodium chloride, 25 mM sodium phosphate, 0.02 % sodium azide | 90% H2O/10% D2O | 6.5 | 288 | |||
7 | 3D HNCO | 1 mM [U-100% 13C; U-100% 15N] protein, 50 mM sodium chloride, 25 mM sodium phosphate, 0.02 % sodium azide | 90% H2O/10% D2O | 6.5 | 288 | |||
8 | 3D C(CO)NH | 1 mM [U-100% 13C; U-100% 15N] protein, 50 mM sodium chloride, 25 mM sodium phosphate, 0.02 % sodium azide | 90% H2O/10% D2O | 6.5 | 288 | |||
9 | 3D H(CCO)NH | 1 mM [U-100% 13C; U-100% 15N] protein, 50 mM sodium chloride, 25 mM sodium phosphate, 0.02 % sodium azide | 90% H2O/10% D2O | 6.5 | 288 | |||
10 | 3D HCCH-TOCSY | 1 mM [U-100% 13C; U-100% 15N] protein, 50 mM sodium chloride, 25 mM sodium phosphate, 0.02 % sodium azide | 100% D2O | 6.5 | 288 | |||
11 | 2D 1H-15N HSQC | 1 mM [U-100% 13C; U-100% 15N] protein, 50 mM sodium chloride, 25 mM sodium phosphate, 0.02 % sodium azide | 90% H2O/10% D2O |
NMR Spectrometer Information | |||
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Spectrometer | Manufacturer | Model | Field Strength |
1 | Varian | UNITY | 600 |
2 | Varian | UNITY | 500 |
NMR Refinement | ||
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Method | Details | Software |
simulated annealing | ARIA |
NMR Ensemble Information | |
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Conformer Selection Criteria | structures with the lowest energy |
Conformers Calculated Total Number | 50 |
Conformers Submitted Total Number | 25 |
Representative Model | 1 (lowest energy) |
Computation: NMR Software | ||||
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# | Classification | Version | Software Name | Author |
1 | structure solution | ARIA | 1.2 | Linge, O'Donoghue and Nilges |
2 | structure solution | CNS | 1.1 | Brunger, Adams, Clore, Gros, Nilges and Read |
3 | peak picking | NMRView | Johnson, One Moon Scientific | |
4 | processing | NMRPipe | Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax | |
5 | refinement | CNS | 1.1 | Brunger, Adams, Clore, Gros, Nilges and Read |