2JXW
Solution Structure of the Tandem WW Domains of FBP21
SOLUTION NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 2D 1H-15N HSQC | 0.5mM [U-99% 15N] FBP21; 90% H2O/10% D2O | 90% H2O/10% D2O | 6.5 | 1 atm | 293 | ||
2 | 3D CBCA(CO)NH | 1.0mM [U-99% 13C; U-99% 15N] FBP21; 90% H2O/10% D2O | 90% H2O/10% D2O | 6.5 | 1 atm | 293 | ||
3 | 3D C(CO)NH | 1.0mM [U-99% 13C; U-99% 15N] FBP21; 90% H2O/10% D2O | 90% H2O/10% D2O | 6.5 | 1 atm | 293 | ||
4 | 3D 1H-15N NOESY | 1.0mM [U-99% 13C; U-99% 15N] FBP21; 90% H2O/10% D2O | 90% H2O/10% D2O | 6.5 | 1 atm | 293 | ||
5 | 3D 1H-13C NOESY | 1.0mM [U-99% 13C; U-99% 15N] FBP21; 90% H2O/10% D2O | 90% H2O/10% D2O | 6.5 | 1 atm | 293 | ||
6 | 2D 1H-1H TOCSY | 1.0mM [U-99% 13C; U-99% 15N] FBP21; 90% H2O/10% D2O | 90% H2O/10% D2O | 6.5 | 1 atm | 298 | ||
7 | 2D 1H-1H NOESY | 1.0mM [U-99% 13C; U-99% 15N] FBP21; 90% H2O/10% D2O | 90% H2O/10% D2O | 6.5 | 1 atm | 298 | ||
8 | 3D HCCH-TOCSY | 1.0mM [U-99% 13C; U-99% 15N] FBP21; 90% H2O/10% D2O | 90% H2O/10% D2O | 6.5 | 1 atm | 293 | ||
9 | 3D HCCH-COSY | 1.0mM [U-99% 13C; U-99% 15N] FBP21; 90% H2O/10% D2O | 90% H2O/10% D2O | 6.5 | 1 atm | 293 | ||
10 | 3D HBHA(CO)NH | 1.0mM [U-99% 13C; U-99% 15N] FBP21; 90% H2O/10% D2O | 90% H2O/10% D2O | 6.5 | 1 atm | 293 | ||
11 | 3D H(CCO)NH | 1.0mM [U-99% 13C; U-99% 15N] FBP21; 90% H2O/10% D2O | 90% H2O/10% D2O | 6.5 | 1 atm | 293 | ||
12 | 3D HNCO | 1.0mM [U-99% 13C; U-99% 15N] FBP21; 90% H2O/10% D2O | 90% H2O/10% D2O | 6.5 | 1 atm | 293 | ||
13 | 3D HN(CO)CA | 1.0mM [U-99% 13C; U-99% 15N] FBP21; 90% H2O/10% D2O | 90% H2O/10% D2O | 6.5 | 1 atm | 293 | ||
14 | 3D HNCACB | 1.0mM [U-99% 13C; U-99% 15N] FBP21; 90% H2O/10% D2O | 90% H2O/10% D2O | 6.5 | 1 atm | 293 |
NMR Spectrometer Information | |||
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Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | DMX | 500 |
2 | Bruker | DMX | 600 |
NMR Refinement | ||
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Method | Details | Software |
simulated annealing | The structures cannot be superimposed as a entire molecule due to the flexible linker. It's only can be superimposed in the WW domain region respectively. Taking each domain individually(6-32AA and 47-73AA), the r.m.s.d. values close is to 0.4 for backbone. | Sparky |
NMR Ensemble Information | |
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Conformer Selection Criteria | structures with the lowest energy |
Conformers Calculated Total Number | 200 |
Conformers Submitted Total Number | 20 |
Representative Model | 1 (lowest energy) |
Computation: NMR Software | ||||
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# | Classification | Version | Software Name | Author |
1 | chemical shift assignment | Sparky | Goddard | |
2 | data analysis | Sparky | Goddard | |
3 | peak picking | Sparky | Goddard | |
4 | structure solution | CNSSOLVE | 1.1 | Brunger, Adams, Clore, Gros, Nilges and Read |
5 | refinement | CNSSOLVE | 1.1 | Brunger, Adams, Clore, Gros, Nilges and Read |
6 | collection | XwinNMR | Bruker Biospin | |
7 | processing | NMRPipe | Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax | |
8 | data analysis | MOLMOL | Koradi, Billeter and Wuthrich | |
9 | data analysis | ProcheckNMR | Laskowski and MacArthur | |
10 | data analysis | TALOS | Cornilescu, Delaglio and Bax | |
11 | processing | NMRDraw | Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax |