2KSN
Solution Structure of the N-terminal Domain of DC-UbP/UBTD2
SOLUTION NMR
NMR Experiment | ||||||||
---|---|---|---|---|---|---|---|---|
Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 2D 1H-15N HSQC | 1mM [U-100% 15N] protein-1, 20mM sodium phosphate-2, 100mM sodium chloride-3 | 90% H2O/10% D2O | 6.5 | ambient | 298 | ||
2 | 3D HNHA | 1mM [U-100% 15N] protein-1, 20mM sodium phosphate-2, 100mM sodium chloride-3 | 90% H2O/10% D2O | 6.5 | ambient | 298 | ||
3 | 3D 1H-15N NOESY | 1mM [U-100% 15N] protein-1, 20mM sodium phosphate-2, 100mM sodium chloride-3 | 90% H2O/10% D2O | 6.5 | ambient | 298 | ||
4 | 3D CBCA(CO)NH | 1mM [U-100% 13C; U-100% 15N] protein-4, 20mM sodium phosphate-5, 100mM sodium chloride-6 | 90% H2O/10% D2O | 6.5 | ambient | 298 | ||
5 | 3D HNCACB | 1mM [U-100% 13C; U-100% 15N] protein-4, 20mM sodium phosphate-5, 100mM sodium chloride-6 | 90% H2O/10% D2O | 6.5 | ambient | 298 | ||
6 | 3D C(CO)NH | 1mM [U-100% 13C; U-100% 15N] protein-4, 20mM sodium phosphate-5, 100mM sodium chloride-6 | 90% H2O/10% D2O | 6.5 | ambient | 298 | ||
7 | 3D HNCO | 1mM [U-100% 13C; U-100% 15N] protein-4, 20mM sodium phosphate-5, 100mM sodium chloride-6 | 90% H2O/10% D2O | 6.5 | ambient | 298 | ||
8 | 3D HCCH-TOCSY | 1mM [U-100% 13C; U-100% 15N] protein-4, 20mM sodium phosphate-5, 100mM sodium chloride-6 | 90% H2O/10% D2O | 6.5 | ambient | 298 | ||
9 | 3D HCCH-COSY | 1mM [U-100% 13C; U-100% 15N] protein-4, 20mM sodium phosphate-5, 100mM sodium chloride-6 | 90% H2O/10% D2O | 6.5 | ambient | 298 | ||
10 | 3D 1H-13C NOESY | 1mM [U-100% 13C; U-100% 15N] protein-4, 20mM sodium phosphate-5, 100mM sodium chloride-6 | 90% H2O/10% D2O | 6.5 | ambient | 298 |
NMR Spectrometer Information | |||
---|---|---|---|
Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | AVANCE | 600 |
NMR Refinement | ||
---|---|---|
Method | Details | Software |
torsion angle dynamics | NMRPipe |
NMR Ensemble Information | |
---|---|
Conformer Selection Criteria | structures with the lowest energy |
Conformers Calculated Total Number | 200 |
Conformers Submitted Total Number | 10 |
Representative Model | 1 (lowest energy) |
Computation: NMR Software | ||||
---|---|---|---|---|
# | Classification | Version | Software Name | Author |
1 | processing | NMRPipe | Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax | |
2 | peak picking | Sparky | Goddard | |
3 | chemical shift assignment | Sparky | Goddard | |
4 | structure solution | ARIA | 2.0 | Linge, O'Donoghue and Nilges |
5 | refinement | ARIA | 2.0 | Linge, O'Donoghue and Nilges |
6 | data analysis | ProcheckNMR | Laskowski and MacArthur |