2KY6
Structure of ARC92VBD/MED25ACID
SOLUTION NMR
NMR Experiment | ||||||||
---|---|---|---|---|---|---|---|---|
Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 2D 1H-15N HSQC | 50-1000 uM [U-99% 15N] ARC92VBD | 95% H2O/5% D2O | 150 | 6.5 | ambient | 298 | |
2 | 2D 1H-15N HSQC | 50-1000 uM [U-99% 15N] ARC92VBD | 95% H2O/5% D2O | 150 | 6.5 | ambient | 298 | |
3 | 2D 1H-1H NOESY | 1.0 mM ARC92VBD | 100% D2O | 150 | 6.5 | ambient | 298 | |
4 | 3D 1H-15N NOESY | 50-1000 uM [U-99% 15N] ARC92VBD | 95% H2O/5% D2O | 150 | 6.5 | ambient | 298 | |
5 | 3D 1H-13C NOESY | 200-1000 uM [U-99% 13C; U-99% 15N] ARC92VBD | 95% H2O/5% D2O | 150 | 6.5 | ambient | 298 | |
6 | 3D HNCO | 700 uM [U-100% 13C; U-100% 15N; U-80% 2H] ARC92VBD | 95% H2O/5% D2O | 150 | 6.5 | ambient | 298 | |
7 | 3D HNCA | 700 uM [U-100% 13C; U-100% 15N; U-80% 2H] ARC92VBD | 95% H2O/5% D2O | 150 | 6.5 | ambient | 298 | |
8 | 3D HN(CO)CA | 700 uM [U-100% 13C; U-100% 15N; U-80% 2H] ARC92VBD | 95% H2O/5% D2O | 150 | 6.5 | ambient | 298 | |
9 | 3D HNCACB | 700 uM [U-100% 13C; U-100% 15N; U-80% 2H] ARC92VBD | 95% H2O/5% D2O | 150 | 6.5 | ambient | 298 | |
10 | 3D HCCH-TOCSY | 200-1000 uM [U-99% 13C; U-99% 15N] ARC92VBD | 95% H2O/5% D2O | 150 | 6.5 | ambient | 298 | |
11 | 2D 1H-13C HSQC | 200-1000 uM [U-99% 13C; U-99% 15N] ARC92VBD | 95% H2O/5% D2O | 150 | 6.5 | ambient | 298 | |
12 | 4D HMQCNOESYHMQC | 700 uM [ILV-100% 13C1H; U-100% 15N; U-100% 2H] ARC92VBD | 100% D2O | 150 | 6.5 | ambient | 298 |
NMR Spectrometer Information | |||
---|---|---|---|
Spectrometer | Manufacturer | Model | Field Strength |
1 | Varian | INOVA | 600 |
2 | Varian | INOVA | 500 |
3 | Bruker | AVANCE | 900 |
4 | Bruker | AVANCE | 750 |
NMR Refinement | ||
---|---|---|
Method | Details | Software |
simulated annealing, molecular dynamics | CYANA calculation, CNS in water box | CYANA |
NMR Ensemble Information | |
---|---|
Conformer Selection Criteria | structures with the lowest energy |
Conformers Calculated Total Number | 50 |
Conformers Submitted Total Number | 25 |
Representative Model | 1 (lowest energy) |
Computation: NMR Software | ||||
---|---|---|---|---|
# | Classification | Version | Software Name | Author |
1 | structure solution | CYANA | 3.0 | Guntert, Mumenthaler and Wuthrich |
2 | refinement | CNS | 1.1 | Brunger, Adams, Clore, Gros, Nilges and Read |
3 | chemical shift assignment | CARA | 1.8.4 | Keller and Wuthrich |
4 | peak picking | CARA | 1.8.4 | Keller and Wuthrich |
5 | processing | NMRPipe | Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax |