2LH9
NMR structure of the first lotus domain of tudor domain-containing protein 7
SOLUTION NMR
NMR Experiment | ||||||||
---|---|---|---|---|---|---|---|---|
Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 2D 1H-15N HSQC | 1.5 mM [U-100% 15N] protein, 50 mM sodium acetate | 90% H2O/10% D2O | 0 | 4.3 | ambient | 298 | |
2 | 3D 1H-15N NOESY | 1.5 mM [U-100% 15N] protein, 50 mM sodium acetate | 90% H2O/10% D2O | 0 | 4.3 | ambient | 298 | |
3 | 2D 1H-13C HSQC | 1.5 mM [U-100% 13C; U-100% 15N] protein, 50 mM sodium acetate | 90% H2O/10% D2O | 0 | 4.3 | ambient | 298 | |
4 | 2D 1H-13C HSQC aromatic | 1.5 mM [U-100% 13C; U-100% 15N] protein, 50 mM sodium acetate | 90% H2O/10% D2O | 0 | 4.3 | ambient | 298 | |
5 | 3D HNCACB | 1.5 mM [U-100% 13C; U-100% 15N] protein, 50 mM sodium acetate | 90% H2O/10% D2O | 0 | 4.3 | ambient | 298 | |
6 | 3D CBCA(CO)NH | 1.5 mM [U-100% 13C; U-100% 15N] protein, 50 mM sodium acetate | 90% H2O/10% D2O | 0 | 4.3 | ambient | 298 | |
7 | 3D HNCO | 1.5 mM [U-100% 13C; U-100% 15N] protein, 50 mM sodium acetate | 90% H2O/10% D2O | 0 | 4.3 | ambient | 298 | |
8 | 3D HN(CA)CO | 1.5 mM [U-100% 13C; U-100% 15N] protein, 50 mM sodium acetate | 90% H2O/10% D2O | 0 | 4.3 | ambient | 298 | |
9 | 3D HBHA(CO)NH | 1.5 mM [U-100% 13C; U-100% 15N] protein, 50 mM sodium acetate | 90% H2O/10% D2O | 0 | 4.3 | ambient | 298 | |
10 | 3D CCH-TOCSY | 1.5 mM [U-100% 13C; U-100% 15N] protein, 50 mM sodium acetate | 90% H2O/10% D2O | 0 | 4.3 | ambient | 298 | |
11 | 3D 1H-15N NOESY | 1.5 mM [U-100% 13C; U-100% 15N] protein, 50 mM sodium acetate | 90% H2O/10% D2O | 0 | 4.3 | ambient | 298 | |
12 | 3D 1H-13C NOESY aliphatic | 1.5 mM [U-100% 13C; U-100% 15N] protein, 50 mM sodium acetate | 90% H2O/10% D2O | 0 | 4.3 | ambient | 298 | |
13 | 3D 1H-13C NOESY aromatic | 1.5 mM [U-100% 13C; U-100% 15N] protein, 50 mM sodium acetate | 90% H2O/10% D2O | 0 | 4.3 | ambient | 298 | |
14 | 2D 1H-15N HSQC | 1.5 mM [U-100% 13C; U-100% 15N] protein, 50 mM sodium acetate | 90% H2O/10% D2O | 0 | 4.3 | ambient | 298 |
NMR Spectrometer Information | |||
---|---|---|---|
Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | AVANCE | 700 |
NMR Refinement | ||
---|---|---|
Method | Details | Software |
simulated annealing | CYANA |
NMR Ensemble Information | |
---|---|
Conformer Selection Criteria | structures with the lowest energy |
Conformers Calculated Total Number | 200 |
Conformers Submitted Total Number | 20 |
Representative Model | 1 (lowest energy) |
Computation: NMR Software | ||||
---|---|---|---|---|
# | Classification | Version | Software Name | Author |
1 | structure solution | CYANA | Guntert, Mumenthaler and Wuthrich | |
2 | refinement | Amber | Case, Darden, Cheatham, III, Simmerling, Wang, Duke, Luo, and Kollm | |
3 | chemical shift assignment | SANE | Duggan, Legge, Dyson & Wright | |
4 | processing | NMRView | Johnson, One Moon Scientific |