2LW3
Solution structure of the soluble domain of MmpS4 from Mycobacterium tuberculosis
SOLUTION NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 2D 1H-15N HSQC | 0.2-0.5mM [U-100% 15N] MmpS4-4, 2mM DTT-5, 50mM sodium phosphate-6 | 90% H2O/10% D2O | 0.108 | 7.5 | ambient | 298 | |
2 | 2D 1H-13C HSQC | 0.2-0.5mM [U-100% 13C; U-100% 15N] MmpS4-1, 2mM DTT-2, 50mM sodium phosphate-3 | 90% H2O/10% D2O | 0.108 | 7.5 | ambient | 298 | |
3 | 3D CBCA(CO)NH | 0.2-0.5mM [U-100% 13C; U-100% 15N] MmpS4-1, 2mM DTT-2, 50mM sodium phosphate-3 | 90% H2O/10% D2O | 0.108 | 7.5 | ambient | 298 | |
4 | 3D HNCO | 0.2-0.5mM [U-100% 13C; U-100% 15N] MmpS4-1, 2mM DTT-2, 50mM sodium phosphate-3 | 90% H2O/10% D2O | 0.108 | 7.5 | ambient | 298 | |
5 | 3D HNCA | 0.2-0.5mM [U-100% 13C; U-100% 15N] MmpS4-1, 2mM DTT-2, 50mM sodium phosphate-3 | 90% H2O/10% D2O | 0.108 | 7.5 | ambient | 298 | |
6 | 3D HNCACB | 0.2-0.5mM [U-100% 13C; U-100% 15N] MmpS4-1, 2mM DTT-2, 50mM sodium phosphate-3 | 90% H2O/10% D2O | 0.108 | 7.5 | ambient | 298 | |
7 | 3D HBHA(CO)NH | 0.2-0.5mM [U-100% 13C; U-100% 15N] MmpS4-1, 2mM DTT-2, 50mM sodium phosphate-3 | 90% H2O/10% D2O | 0.108 | 7.5 | ambient | 298 | |
8 | 3D H(CCO)NH | 0.2-0.5mM [U-100% 13C; U-100% 15N] MmpS4-1, 2mM DTT-2, 50mM sodium phosphate-3 | 90% H2O/10% D2O | 0.108 | 7.5 | ambient | 298 | |
9 | 3D HCCH-TOCSY | 0.2-0.5mM [U-100% 13C; U-100% 15N] MmpS4-1, 2mM DTT-2, 50mM sodium phosphate-3 | 90% H2O/10% D2O | 0.108 | 7.5 | ambient | 298 | |
10 | 3D 1H-15N NOESY | 0.2-0.5mM [U-100% 15N] MmpS4-4, 2mM DTT-5, 50mM sodium phosphate-6 | 90% H2O/10% D2O | 0.108 | 7.5 | ambient | 298 | |
11 | 3D 1H-13C NOESY | 0.2-0.5mM [U-100% 13C; U-100% 15N] MmpS4-7, 2mM DTT-8, 50mM sodium phosphate-9 | 100% D2O | 0.108 | 7.5 | ambient | 298 | |
12 | 3D HCCH-COSY | 0.2-0.5mM [U-100% 13C; U-100% 15N] MmpS4-1, 2mM DTT-2, 50mM sodium phosphate-3 | 90% H2O/10% D2O | 0.108 | 7.5 | ambient | 298 |
NMR Spectrometer Information | |||
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Spectrometer | Manufacturer | Model | Field Strength |
1 | Varian | INOVA | 500 |
2 | Varian | INOVA | 700 |
3 | Bruker | AVANCE | 850 |
NMR Refinement | ||
---|---|---|
Method | Details | Software |
simulated annealing | NMRDraw |
NMR Ensemble Information | |
---|---|
Conformer Selection Criteria | structures with the lowest energy |
Conformers Calculated Total Number | 300 |
Conformers Submitted Total Number | 20 |
Representative Model | 1 (lowest energy) |
Computation: NMR Software | ||||
---|---|---|---|---|
# | Classification | Version | Software Name | Author |
1 | processing | NMRDraw | Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax | |
2 | chemical shift assignment | NMRView | Johnson, One Moon Scientific | |
3 | peak picking | NMRView | Johnson, One Moon Scientific | |
4 | data analysis | NMRView | Johnson, One Moon Scientific | |
5 | peak picking | Sparky | Goddard | |
6 | data analysis | Sparky | Goddard | |
7 | structure solution | X-PLOR NIH | Schwieters, Kuszewski, Tjandra and Clore | |
8 | refinement | X-PLOR NIH | Schwieters, Kuszewski, Tjandra and Clore |