2M6O
The actinobacterial transcription factor RbpA binds to the principal sigma subunit of RNA polymerase
SOLUTION NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 2D 1H-15N HSQC | 3 mM beta-mercaptoethanol, 500 mM sodium chloride, 20 mM TRIS | 90% H2O/10% D2O | 0.5 | 7.5 | ambient | 310 | |
2 | 3D HNCO | 3 mM beta-mercaptoethanol, 500 mM sodium chloride, 20 mM TRIS | 90% H2O/10% D2O | 0.5 | 7.5 | ambient | 310 | |
3 | 3D HNCA | 3 mM beta-mercaptoethanol, 500 mM sodium chloride, 20 mM TRIS | 90% H2O/10% D2O | 0.5 | 7.5 | ambient | 310 | |
4 | 3D HNCACB | 3 mM beta-mercaptoethanol, 500 mM sodium chloride, 20 mM TRIS | 90% H2O/10% D2O | 0.5 | 7.5 | ambient | 310 | |
5 | 3D CBCA(CO)NH | 3 mM beta-mercaptoethanol, 500 mM sodium chloride, 20 mM TRIS | 90% H2O/10% D2O | 0.5 | 7.5 | ambient | 310 | |
6 | 3D HBHA(CO)NH | 3 mM beta-mercaptoethanol, 500 mM sodium chloride, 20 mM TRIS | 90% H2O/10% D2O | 0.5 | 7.5 | ambient | 310 | |
7 | 3D 1H-13C NOESY | 3 mM beta-mercaptoethanol, 500 mM sodium chloride, 20 mM TRIS | 90% H2O/10% D2O | 0.5 | 7.5 | ambient | 310 | |
8 | 3D 1H-15N NOESY | 3 mM beta-mercaptoethanol, 500 mM sodium chloride, 20 mM TRIS | 90% H2O/10% D2O | 0.5 | 7.5 | ambient | 310 | |
9 | 3D HCCH-TOCSY | 3 mM beta-mercaptoethanol, 500 mM sodium chloride, 20 mM TRIS | 90% H2O/10% D2O | 0.5 | 7.5 | ambient | 310 |
NMR Spectrometer Information | |||
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Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | AVANCE | 800 |
NMR Refinement | ||
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Method | Details | Software |
simulated annealing, distance geometry | ARIA |
NMR Ensemble Information | |
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Conformer Selection Criteria | structures with the lowest energy |
Conformers Calculated Total Number | 200 |
Conformers Submitted Total Number | 10 |
Representative Model | 1 (lowest energy) |
Computation: NMR Software | ||||
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# | Classification | Version | Software Name | Author |
1 | structure solution | ARIA | Linge, O'Donoghue and Nilges | |
2 | refinement | ARIA | Linge, O'Donoghue and Nilges |