2RNL
Solution structure of the EGF-like domain from human Amphiregulin
SOLUTION NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 3D 1H-15N NOESY | 20mM [U-100% 2H] TRIS; 100mM sodium chloride; 0.02% sodium azide; 10% [U-100% 2H] D2O; 90% H2O/10% D2O | 90% H2O/10% D2O | 120 | 7.0 | ambient | 298 | |
2 | 3D 1H-13C NOESY | 20mM [U-100% 2H] TRIS; 100mM sodium chloride; 0.02% sodium azide; 10% [U-100% 2H] D2O; 90% H2O/10% D2O | 90% H2O/10% D2O | 120 | 7.0 | ambient | 298 |
NMR Spectrometer Information | |||
---|---|---|---|
Spectrometer | Manufacturer | Model | Field Strength |
1 | Varian | INOVA | 800 |
2 | Varian | INOVA | 900 |
NMR Refinement | ||
---|---|---|
Method | Details | Software |
torsion angle dynamics | VNMR |
NMR Ensemble Information | |
---|---|
Conformer Selection Criteria | target function |
Conformers Calculated Total Number | 100 |
Conformers Submitted Total Number | 20 |
Representative Model | 1 (lowest energy) |
Computation: NMR Software | ||||
---|---|---|---|---|
# | Classification | Version | Software Name | Author |
1 | collection | VNMR | 6.1C | Varian |
2 | processing | NMRPipe | 20030801 | Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax |
3 | data analysis | NMRView | 5.0.4 | Johnson, One Moon Scientific |
4 | data analysis | KUJIRA | 0.9820 | Kobayashi,N. |
5 | chemical shift assignment | KUJIRA | 0.9820 | Kobayashi,N. |
6 | peak picking | KUJIRA | 0.9820 | Kobayashi,N. |
7 | structure solution | CYANA | 2.0.17 | Guntert, Mumenthaler and Wuthrich |
8 | refinement | CYANA | 2.0.17 | Guntert, Mumenthaler and Wuthrich |