2KSJ
Structure and Dynamics of the Membrane-bound form of Pf1 Coat Protein: Implications for Structural Rearrangement During Virus Assembly
SOLUTION NMR - SOLID-STATE NMR
NMR Experiment | ||||||||
---|---|---|---|---|---|---|---|---|
Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 1D 15N, 2D 1H-15N SLF | 5 mM [U-98% 15N] protein | 100% H2O | 6.7 | ambient | 313 | ||
2 | 1D 15N | 5 mM [U-98% 15N] protein | 100% H2O | 6.7 | ambient | 295 | ||
3 | 2D 1H-15N HSQC | 1 mM [U-95% 15N] protein, 1 mM [U-98% 13C; U-98% 15N] protein | 90% H2O/10% D2O | 6.7 | ambient | 313 | ||
4 | 3D HNCA | 1 mM [U-95% 15N] protein, 1 mM [U-98% 13C; U-98% 15N] protein | 90% H2O/10% D2O | 6.7 | ambient | 313 | ||
5 | 2D 1H-15N IPAP | 1 mM [U-95% 15N] protein, 1 mM [U-98% 13C; U-98% 15N] protein | 90% H2O/10% D2O | 6.7 | ambient | 313 | ||
6 | 3D 1H-15N NOESY | 1 mM [U-95% 15N] protein, 1 mM [U-98% 13C; U-98% 15N] protein | 90% H2O/10% D2O | 6.7 | ambient | 313 |
NMR Spectrometer Information | |||
---|---|---|---|
Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | AVANCE | 750 |
2 | Bruker | AVANCE | 500 |
3 | Bruker | DRX | 600 |
4 | Bruker | AVANCE | 700 |
NMR Refinement | ||
---|---|---|
Method | Details | Software |
simulated annealing | X-PLOR NIH |
NMR Ensemble Information | |
---|---|
Conformer Selection Criteria | structures with the lowest energy |
Conformers Calculated Total Number | 50 |
Conformers Submitted Total Number | 10 |
Representative Model | 1 (lowest energy) |
Computation: NMR Software | ||||
---|---|---|---|---|
# | Classification | Version | Software Name | Author |
1 | structure solution | X-PLOR NIH | Schwieters, Kuszewski, Tjandra and Clore | |
2 | refinement | X-PLOR NIH | Schwieters, Kuszewski, Tjandra and Clore |