2KVK
Solution structure of ADF/cofilin (LDCOF) from Leishmania donovani
SOLUTION NMR
NMR Experiment | ||||||||
---|---|---|---|---|---|---|---|---|
Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 2D 1H-15N HSQC | 20mM sodium phosphate; 50mM sodium chloride; 0.1% sodium azide; 1mM AEBSF protease inhibitor; 1mM DTT; 95% H2O/5% D2O | 95% H2O/5% D2O | 50 | 6.5 | ambient | 298 | |
2 | 2D 1H-13C HSQC aliphatic | 20mM sodium phosphate; 50mM sodium chloride; 0.1% sodium azide; 1mM AEBSF protease inhibitor; 1mM DTT; 100% D2O | 100% D2O | 50 | 6.5 | ambient | 298 | |
3 | 3D CBCA(CO)NH | 20mM sodium phosphate; 50mM sodium chloride; 0.1% sodium azide; 1mM AEBSF protease inhibitor; 1mM DTT; 95% H2O/5% D2O | 95% H2O/5% D2O | 50 | 6.5 | ambient | 298 | |
4 | 3D HNCACB | 20mM sodium phosphate; 50mM sodium chloride; 0.1% sodium azide; 1mM AEBSF protease inhibitor; 1mM DTT; 95% H2O/5% D2O | 95% H2O/5% D2O | 50 | 6.5 | ambient | 298 | |
5 | 3D HNCO | 20mM sodium phosphate; 50mM sodium chloride; 0.1% sodium azide; 1mM AEBSF protease inhibitor; 1mM DTT; 95% H2O/5% D2O | 95% H2O/5% D2O | 50 | 6.5 | ambient | 298 | |
6 | 3D HN(CA)CO | 20mM sodium phosphate; 50mM sodium chloride; 0.1% sodium azide; 1mM AEBSF protease inhibitor; 1mM DTT; 95% H2O/5% D2O | 95% H2O/5% D2O | 50 | 6.5 | ambient | 298 | |
7 | 3D HCCH-TOCSY | 20mM sodium phosphate; 50mM sodium chloride; 0.1% sodium azide; 1mM AEBSF protease inhibitor; 1mM DTT; 95% H2O/5% D2O | 95% H2O/5% D2O | 50 | 6.5 | ambient | 298 | |
8 | 3D H(CCO)NH | 20mM sodium phosphate; 50mM sodium chloride; 0.1% sodium azide; 1mM AEBSF protease inhibitor; 1mM DTT; 95% H2O/5% D2O | 95% H2O/5% D2O | 50 | 6.5 | ambient | 298 | |
9 | 3D C(CO)NH | 20mM sodium phosphate; 50mM sodium chloride; 0.1% sodium azide; 1mM AEBSF protease inhibitor; 1mM DTT; 95% H2O/5% D2O | 95% H2O/5% D2O | 50 | 6.5 | ambient | 298 | |
10 | 3D 1H-15N NOESY | 20mM sodium phosphate; 50mM sodium chloride; 0.1% sodium azide; 1mM AEBSF protease inhibitor; 1mM DTT; 95% H2O/5% D2O | 95% H2O/5% D2O | 50 | 6.5 | ambient | 298 | |
11 | 3D 1H-13C NOESY aliphatic | 20mM sodium phosphate; 50mM sodium chloride; 0.1% sodium azide; 1mM AEBSF protease inhibitor; 1mM DTT; 100% D2O | 100% D2O | 50 | 6.5 | ambient | 298 | |
12 | 3D 1H-13C NOESY aromatic | 20mM sodium phosphate; 50mM sodium chloride; 0.1% sodium azide; 1mM AEBSF protease inhibitor; 1mM DTT; 100% D2O | 100% D2O | 50 | 6.5 | ambient | 298 | |
13 | 2D HB(CBCGCD)HD | 20mM sodium phosphate; 50mM sodium chloride; 0.1% sodium azide; 1mM AEBSF protease inhibitor; 1mM DTT; 95% H2O/5% D2O | 95% H2O/5% D2O | 50 | 6.5 | ambient | 298 | |
14 | 2D HB(CBCGCE)HE | 20mM sodium phosphate; 50mM sodium chloride; 0.1% sodium azide; 1mM AEBSF protease inhibitor; 1mM DTT; 95% H2O/5% D2O | 95% H2O/5% D2O | 50 | 6.5 | ambient | 298 | |
15 | 2D 1H-13C HSQC aromatic | 20mM sodium phosphate; 50mM sodium chloride; 0.1% sodium azide; 1mM AEBSF protease inhibitor; 1mM DTT; 100% D2O | 100% D2O | 50 | 6.5 | ambient | 298 |
NMR Spectrometer Information | |||
---|---|---|---|
Spectrometer | Manufacturer | Model | Field Strength |
1 | Varian | INOVA | 600 |
2 | Bruker | AVANCE | 800 |
NMR Refinement | ||
---|---|---|
Method | Details | Software |
torsion angle dynamics | NMRPipe |
NMR Ensemble Information | |
---|---|
Conformer Selection Criteria | target function |
Conformers Calculated Total Number | 200 |
Conformers Submitted Total Number | 10 |
Representative Model | 1 (lowest energy) |
Computation: NMR Software | ||||
---|---|---|---|---|
# | Classification | Version | Software Name | Author |
1 | processing | NMRPipe | Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax | |
2 | processing | NMRDraw | Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax | |
3 | chemical shift assignment | CARA | 1.8.4 | Keller and Wuthrich |
4 | structure solution | TALOS | TALOS+ | Cornilescu, Delaglio and Bax |
5 | structure solution | CYANA | 3.0 | Guntert, Mumenthaler and Wuthrich |
6 | data analysis | PSVS | 1.4 | Bhattacharya and Montelione |
7 | refinement | CYANA | 3.0 | Guntert, Mumenthaler and Wuthrich |
8 | refinement | TALOS | TALOS+ | Cornilescu, Delaglio and Bax |
9 | refinement | CING | Vuister et al. |