2LYJ
NOE-based 3D structure of the CylR2 homodimer at 298K
SOLUTION NMR
NMR Experiment | ||||||||
---|---|---|---|---|---|---|---|---|
Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 2D 1H-15N HSQC | 0.52 mM [U-100% 13C; U-100% 15N] CylR2, strand 1, 600 mM sodium chloride, 50 mM HEPES, 93 % H2O, 7 % D2O | 93% H2O/7% D2O | 0.6 | 7.0 | ambient | 298 | |
2 | 2D 1H-13C HSQC aliphatic | 0.52 mM [U-100% 13C; U-100% 15N] CylR2, strand 1, 600 mM sodium chloride, 50 mM HEPES, 93 % H2O, 7 % D2O | 93% H2O/7% D2O | 0.6 | 7.0 | ambient | 298 | |
3 | 2D 1H-13C HSQC aromatic | 0.52 mM [U-100% 13C; U-100% 15N] CylR2, strand 1, 600 mM sodium chloride, 50 mM HEPES, 93 % H2O, 7 % D2O | 93% H2O/7% D2O | 0.6 | 7.0 | ambient | 298 | |
4 | 3D 1H-15N NOESY | 0.52 mM [U-100% 13C; U-100% 15N] CylR2, strand 1, 600 mM sodium chloride, 50 mM HEPES, 93 % H2O, 7 % D2O | 93% H2O/7% D2O | 0.6 | 7.0 | ambient | 298 | |
5 | 3D 1H-13C NOESY aliphatic | 0.52 mM [U-100% 13C; U-100% 15N] CylR2, strand 1, 600 mM sodium chloride, 50 mM HEPES, 93 % H2O, 7 % D2O | 93% H2O/7% D2O | 0.6 | 7.0 | ambient | 298 | |
6 | 3D 1H-13C NOESY aromatic | 0.52 mM [U-100% 13C; U-100% 15N] CylR2, strand 1, 600 mM sodium chloride, 50 mM HEPES, 93 % H2O, 7 % D2O | 93% H2O/7% D2O | 0.6 | 7.0 | ambient | 298 | |
7 | 3D HCCH-TOCSY | 0.52 mM [U-100% 13C; U-100% 15N] CylR2, strand 1, 600 mM sodium chloride, 50 mM HEPES, 93 % H2O, 7 % D2O | 93% H2O/7% D2O | 0.6 | 7.0 | ambient | 298 |
NMR Spectrometer Information | |||
---|---|---|---|
Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | AVANCE III | 700 |
NMR Refinement | ||
---|---|---|
Method | Details | Software |
simulated annealing | CYANA |
NMR Ensemble Information | |
---|---|
Conformer Selection Criteria | structures with the lowest energy |
Conformers Calculated Total Number | 200 |
Conformers Submitted Total Number | 20 |
Representative Model | 1 (closest to the average) |
Computation: NMR Software | ||||
---|---|---|---|---|
# | Classification | Version | Software Name | Author |
1 | structure solution | CYANA | 3.0 | Guntert, Mumenthaler and Wuthrich |
2 | refinement | X-PLOR NIH | 2.26 | Schwieters, Kuszewski, Tjandra and Clore |
3 | chemical shift assignment | Sparky | Goddard | |
4 | peak picking | Sparky | Goddard | |
5 | processing | NMRPipe | Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax |