2M5S
High-resolution NMR structure and cryo-EM imaging support multiple functional roles for the accessory I-domain of phage P22 coat protein
SOLUTION NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 2D 1H-15N HSQC | 1.5 mM [U-100% 13C; U-100% 15N] protein, 20 mM sodium phosphate | 90% H2O/10% D2O | 20 | 6.0 | ambient | 310.15 | |
2 | 3D HNCACB | 1.5 mM [U-100% 13C; U-100% 15N] protein, 20 mM sodium phosphate | 90% H2O/10% D2O | 20 | 6.0 | ambient | 310.15 | |
3 | 3D HNCA | 1.5 mM [U-100% 13C; U-100% 15N] protein, 20 mM sodium phosphate | 90% H2O/10% D2O | 20 | 6.0 | ambient | 310.15 | |
4 | 3D HN(CO)CA | 1.5 mM [U-100% 13C; U-100% 15N] protein, 20 mM sodium phosphate | 90% H2O/10% D2O | 20 | 6.0 | ambient | 310.15 | |
5 | 3D HNCO | 1.5 mM [U-100% 13C; U-100% 15N] protein, 20 mM sodium phosphate | 90% H2O/10% D2O | 20 | 6.0 | ambient | 310.15 | |
6 | 3D HN(CA)CO | 1.5 mM [U-100% 13C; U-100% 15N] protein, 20 mM sodium phosphate | 90% H2O/10% D2O | 20 | 6.0 | ambient | 310.15 | |
7 | 3D CCH-TOCSY | 1.5 mM [U-100% 13C; U-100% 15N] protein, 20 mM sodium phosphate | 1% H2O/99% D2O | 20 | 6.0 | ambient | 310.15 | |
8 | 3D HCCH-TOCSY | 1.5 mM [U-100% 13C; U-100% 15N] protein, 20 mM sodium phosphate | 1% H2O/99% D2O | 20 | 6.0 | ambient | 310.15 | |
9 | 3D HNHB | 1.5 mM [U-100% 13C; U-100% 15N] protein, 20 mM sodium phosphate | 90% H2O/10% D2O | 20 | 6.0 | ambient | 310.15 | |
10 | 3D Long-range HNCO | 1.5 mM [U-100% 13C; U-100% 15N] protein, 20 mM sodium phosphate | 90% H2O/10% D2O | 20 | 6.0 | ambient | 310.15 | |
11 | 3D HNHA | 1.5 mM [U-100% 13C; U-100% 15N] protein, 20 mM sodium phosphate | 90% H2O/10% D2O | 20 | 6.0 | ambient | 310.15 | |
12 | 3D 1H-15N TOCSY | 1.5 mM [U-100% 13C; U-100% 15N] protein, 20 mM sodium phosphate | 90% H2O/10% D2O | 20 | 6.0 | ambient | 310.15 | |
13 | 3D 1H-13C NOESY | 1.5 mM [U-100% 13C; U-100% 15N] protein, 20 mM sodium phosphate | 1% H2O/99% D2O | 20 | 6.0 | ambient | 310.15 | |
14 | 3D 1H-15N NOESY | 1.5 mM [U-100% 13C; U-100% 15N] protein, 20 mM sodium phosphate | 90% H2O/10% D2O | 20 | 6.0 | ambient | 310.15 |
NMR Spectrometer Information | |||
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Spectrometer | Manufacturer | Model | Field Strength |
1 | Varian | INOVA | 600 |
2 | Varian | INOVA | 800 |
NMR Refinement | ||
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Method | Details | Software |
simulated annealing, torsion angle dynamics | Automated assignment of NOE spectra was carried out using ARIA using floating chirality. CCPNmr Analysis was used to inspect violations and refine the structure for further calculations with ARIA. | ARIA |
NMR Ensemble Information | |
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Conformer Selection Criteria | structures with the lowest energy |
Conformers Calculated Total Number | 300 |
Conformers Submitted Total Number | 30 |
Representative Model | 1 (closest to the average) |
Computation: NMR Software | ||||
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# | Classification | Version | Software Name | Author |
1 | peak picking | ARIA | 2.3.1 | |
2 | refinement | ARIA/CNS/CCPNmr_Analysis |