2M6U
NMR Structure of CbpAN from Streptococcus pneumoniae
SOLUTION NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 2D 1H-15N HSQC | 50 uM DSS, 100 uM sodium azide, 50 mM sodium phosphate, 50 mM sodium chloride | 95% H2O/5% D2O | 100 | 7.0 | ambient | 298 | |
2 | 3D HNCA | 50 uM DSS, 100 uM sodium azide, 50 mM sodium phosphate, 50 mM sodium chloride | 95% H2O/5% D2O | 100 | 7.0 | ambient | 298 | |
3 | 3D HN(CO)CA | 50 uM DSS, 100 uM sodium azide, 50 mM sodium phosphate, 50 mM sodium chloride | 95% H2O/5% D2O | 100 | 7.0 | ambient | 298 | |
4 | 3D HNCACB | 50 uM DSS, 100 uM sodium azide, 50 mM sodium phosphate, 50 mM sodium chloride | 95% H2O/5% D2O | 100 | 7.0 | ambient | 298 | |
5 | 3D CBCA(CO)NH | 50 uM DSS, 100 uM sodium azide, 50 mM sodium phosphate, 50 mM sodium chloride | 95% H2O/5% D2O | 100 | 7.0 | ambient | 298 | |
6 | 3D HNCO | 50 uM DSS, 100 uM sodium azide, 50 mM sodium phosphate, 50 mM sodium chloride | 95% H2O/5% D2O | 100 | 7.0 | ambient | 298 | |
7 | 3D HN(CA)CO | 50 uM DSS, 100 uM sodium azide, 50 mM sodium phosphate, 50 mM sodium chloride | 95% H2O/5% D2O | 100 | 7.0 | ambient | 298 | |
8 | 3D 1H-15N NOESY | 50 uM DSS, 100 uM sodium azide, 50 mM sodium phosphate, 50 mM sodium chloride | 95% H2O/5% D2O | 100 | 7.0 | ambient | 298 | |
9 | 2D 1H-13C HSQC | 50 uM DSS, 100 uM sodium azide, 50 mM sodium phosphate, 50 mM sodium chloride | 100% D2O | 100 | 7.0 | ambient | 298 | |
10 | 3D HCCH-TOCSY | 50 uM DSS, 100 uM sodium azide, 50 mM sodium phosphate, 50 mM sodium chloride | 100% D2O | 100 | 7.0 | ambient | 298 | |
11 | 3D 1H-13C NOESY aliphatic | 50 uM DSS, 100 uM sodium azide, 50 mM sodium phosphate, 50 mM sodium chloride | 100% D2O | 100 | 7.0 | ambient | 298 | |
12 | 3D 1H-13C NOESY aromatic | 50 uM DSS, 100 uM sodium azide, 50 mM sodium phosphate, 50 mM sodium chloride | 100% D2O | 100 | 7.0 | ambient | 298 |
NMR Spectrometer Information | |||
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Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | AVANCE | 900 |
NMR Refinement | ||
---|---|---|
Method | Details | Software |
torsion angle dynamics, simulated annealing | CYANA |
NMR Ensemble Information | |
---|---|
Conformer Selection Criteria | target function |
Conformers Calculated Total Number | 50 |
Conformers Submitted Total Number | 20 |
Representative Model | 1 (closest to the average) |
Computation: NMR Software | ||||
---|---|---|---|---|
# | Classification | Version | Software Name | Author |
1 | structure solution | CYANA | 2.1 | Guntert, Mumenthaler and Wuthrich |
2 | refinement | CYANA | Guntert, Mumenthaler and Wuthrich | |
3 | refinement | Amber | Case, Darden, Cheatham, III, Simmerling, Wang, Duke, Luo, ... and Kollman |