2MRM
Solution structure of the rhodanese domain of YgaP from E. coli
SOLUTION NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 2D 1H-15N HSQC | 50 mM sodium chloride-1, 20 mM TRIS-2, 0.5 mM [U-100% 13C; U-100% 15N] YgaP-3 | 90% H2O/10% D2O | 0.05 | 7.0 | ambient | 298 | |
2 | 3D CBCA(CO)NH | 50 mM sodium chloride-1, 20 mM TRIS-2, 0.5 mM [U-100% 13C; U-100% 15N] YgaP-3 | 90% H2O/10% D2O | 0.05 | 7.0 | ambient | 298 | |
3 | 3D HNCACB | 50 mM sodium chloride-1, 20 mM TRIS-2, 0.5 mM [U-100% 13C; U-100% 15N] YgaP-3 | 90% H2O/10% D2O | 0.05 | 7.0 | ambient | 298 | |
4 | 3D HNCO | 50 mM sodium chloride-1, 20 mM TRIS-2, 0.5 mM [U-100% 13C; U-100% 15N] YgaP-3 | 90% H2O/10% D2O | 0.05 | 7.0 | ambient | 298 | |
5 | 3D HBHA(CO)NH | 50 mM sodium chloride-1, 20 mM TRIS-2, 0.5 mM [U-100% 13C; U-100% 15N] YgaP-3 | 90% H2O/10% D2O | 0.05 | 7.0 | ambient | 298 | |
6 | 3D H(CCO)NH | 50 mM sodium chloride-1, 20 mM TRIS-2, 0.5 mM [U-100% 13C; U-100% 15N] YgaP-3 | 90% H2O/10% D2O | 0.05 | 7.0 | ambient | 298 | |
7 | 3D C(CO)NH | 50 mM sodium chloride-1, 20 mM TRIS-2, 0.5 mM [U-100% 13C; U-100% 15N] YgaP-3 | 90% H2O/10% D2O | 0.05 | 7.0 | ambient | 298 | |
8 | 3D 1H-15N NOESY | 50 mM sodium chloride-1, 20 mM TRIS-2, 0.5 mM [U-100% 13C; U-100% 15N] YgaP-3 | 90% H2O/10% D2O | 0.05 | 7.0 | ambient | 298 | |
9 | 3D HCCH-TOCSY | 20 mM TRIS-4, 50 mM sodium chloride-5, 0.5 mM [U-100% 13C; U-100% 15N] YgaP-6 | 100% D2O | 0.05 | 7.0 | ambient | 298 | |
10 | 3D HCCH-COSY | 20 mM TRIS-4, 50 mM sodium chloride-5, 0.5 mM [U-100% 13C; U-100% 15N] YgaP-6 | 100% D2O | 0.05 | 7.0 | ambient | 298 | |
11 | 3D 1H-13C NOESY | 20 mM TRIS-4, 50 mM sodium chloride-5, 0.5 mM [U-100% 13C; U-100% 15N] YgaP-6 | 100% D2O | 0.05 | 7.0 | ambient | 298 |
NMR Spectrometer Information | |||
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Spectrometer | Manufacturer | Model | Field Strength |
1 | Varian | INOVA | 700 |
NMR Refinement | ||
---|---|---|
Method | Details | Software |
simulated annealing | NMRPipe |
NMR Ensemble Information | |
---|---|
Conformer Selection Criteria | structures with the lowest energy |
Conformers Calculated Total Number | 100 |
Conformers Submitted Total Number | 10 |
Representative Model | 1 (lowest energy) |
Computation: NMR Software | ||||
---|---|---|---|---|
# | Classification | Version | Software Name | Author |
1 | data analysis | NMRPipe | Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax | |
2 | processing | NMRPipe | Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax | |
3 | peak picking | Sparky | Goddard | |
4 | chemical shift assignment | Sparky | Goddard | |
5 | structure solution | X-PLOR NIH | Schwieters, Kuszewski, Tjandra and Clore | |
6 | refinement | X-PLOR NIH | Schwieters, Kuszewski, Tjandra and Clore |