2N3F
Solution structure of both dsRBDs of DRB4 along with linker (viz. DRB4(1-153))
SOLUTION NMR
NMR Experiment | ||||||||
---|---|---|---|---|---|---|---|---|
Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 2D 1H-15N HSQC | 500 uM [U-100% 15N] DRB4(1-153) | 90% H2O/10% D2O | 0.15 | 7.2 | ambient | 298 | |
2 | 3D HNCO | 500 uM [U-100% 13C; U-100% 15N] DRB4(1-153) | 90% H2O/10% D2O | 0.15 | 7.2 | ambient | 298 | |
3 | 3D HN(CA)CO | 500 uM [U-100% 13C; U-100% 15N] DRB4(1-153) | 90% H2O/10% D2O | 0.15 | 7.2 | ambient | 298 | |
4 | 3D HNCA | 500 uM [U-100% 13C; U-100% 15N] DRB4(1-153) | 90% H2O/10% D2O | 0.15 | 7.2 | ambient | 298 | |
5 | 3D HN(CO)CA | 500 uM [U-100% 13C; U-100% 15N] DRB4(1-153) | 90% H2O/10% D2O | 0.15 | 7.2 | ambient | 298 | |
6 | 3D HNCACB | 500 uM [U-100% 13C; U-100% 15N] DRB4(1-153) | 90% H2O/10% D2O | 0.15 | 7.2 | ambient | 298 | |
7 | 3D HN(COCA)CB | 500 uM [U-100% 13C; U-100% 15N] DRB4(1-153) | 90% H2O/10% D2O | 0.15 | 7.2 | ambient | 298 | |
8 | 2D 1H-13C HSQC | 500 uM [U-100% 13C; U-100% 15N] DRB4(1-153) | 90% H2O/10% D2O | 0.15 | 7.2 | ambient | 298 | |
9 | 3D H(CCO)NH-TOCSY | 500 uM [U-100% 13C; U-100% 15N] DRB4(1-153) | 90% H2O/10% D2O | 0.15 | 7.2 | ambient | 298 | |
10 | 3D (H)C(CO)NH-TOCSY | 500 uM [U-100% 13C; U-100% 15N] DRB4(1-153) | 90% H2O/10% D2O | 0.15 | 7.2 | ambient | 298 | |
11 | 3D HCCH-TOCSY | 500 uM [U-100% 13C; U-100% 15N] DRB4(1-153) | 90% H2O/10% D2O | 0.15 | 7.2 | ambient | 298 | |
12 | 3D HNHA | 500 uM [U-100% 13C; U-100% 15N] DRB4(1-153) | 90% H2O/10% D2O | 0.15 | 7.2 | ambient | 298 | |
13 | 2D 1H-13C HSQC | 500 uM [U-10% 13C] DRB4(1-153) | 90% H2O/10% D2O | 0.15 | 7.2 | ambient | 298 | |
14 | 2D 1H-13C HSQC | 250 uM [U-100% 15N] DRB4(1-153) | 90% H2O/10% D2O | 0.15 | 7.2 | ambient | 298 | |
15 | 3D 1H-13C NOESY | 500 uM [U-100% 15N] DRB4(1-153), 500 uM U-13C,1H MeOnly Ile, Leu, Val (rest 12C,1H); U-15N DRB4(1-153) | 100% D2O | 0.15 | 7.2 | ambient | 298 | |
16 | 2D 1H-15N HSQC | 500 uM [U-100% 15N] DRB4(1-153), 500 uM U-13C,1H MeOnly Ile, Leu, Val (rest 12C,1H); U-15N DRB4(1-153) | 100% D2O | 0.15 | 7.2 | ambient | 298 | |
17 | 2D 1H-1H NOESY | 500 uM [U-100% 15N] DRB4(1-153), 500 uM U-13C,1H MeOnly Ile, Leu, Val (rest 12C,1H); U-15N DRB4(1-153) | 100% D2O | 0.15 | 7.2 | ambient | 298 | |
18 | 2D 1H-15N HSQC | 250 uM [U-100% 15N] DRB4(1-153) | 90% H2O/10% D2O | 0.15 | 7.2 | ambient | 298 | |
19 | 2D 1H-15N HSQC | 500 uM [U-100% 13C; U-100% 15N] DRB4(1-153), filamentous virus, 18mg/mL | 90% H2O/10% D2O | 0.15 | 7.2 | ambient | 298 | |
20 | 3D 1H-15N NOESY | 500 uM [U-100% 15N] DRB4(1-153) | 90% H2O/10% D2O | 0.15 | 7.2 | ambient | 298 | |
21 | 3D 1H-13C NOESY | 500 uM [U-100% 13C; U-100% 15N] DRB4(1-153) | 90% H2O/10% D2O | 0.15 | 7.2 | ambient | 298 |
NMR Spectrometer Information | |||
---|---|---|---|
Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | AVANCE | 600 |
NMR Refinement | ||
---|---|---|
Method | Details | Software |
simulated annealing | TopSpin |
NMR Ensemble Information | |
---|---|
Conformer Selection Criteria | structures with the lowest energy |
Conformers Calculated Total Number | 100 |
Conformers Submitted Total Number | 10 |
Representative Model | 1 (lowest energy) |
Computation: NMR Software | ||||
---|---|---|---|---|
# | Classification | Version | Software Name | Author |
1 | collection | TopSpin | 2.1.6 | Bruker Biospin |
2 | processing | TopSpin | 2.1.6 | Bruker Biospin |
3 | chemical shift assignment | CARA | 1.8.4 | Keller and Wuthrich |
4 | data analysis | CARA | 1.8.4 | Keller and Wuthrich |
5 | peak picking | CARA | 1.8.4 | Keller and Wuthrich |
6 | data analysis | Sparky | Goddard | |
7 | structure solution | Sparky | Goddard | |
8 | data analysis | Sparky | Schwieters, Kuszewski, Tjandra and Clore | |
9 | structure solution | Sparky | Schwieters, Kuszewski, Tjandra and Clore | |
10 | data analysis | Sparky | Goddard | |
11 | structure solution | Sparky | Goddard | |
12 | data analysis | Sparky | Schwieters, Kuszewski, Tjandra and Clore | |
13 | structure solution | Sparky | Schwieters, Kuszewski, Tjandra and Clore | |
14 | structure validation | ProcheckNMR | 3.5.4 | Laskowski and MacArthur |
15 | refinement | X-PLOR NIH | Schwieters, Kuszewski, Tjandra and Clore |