X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 2JF7 

Crystallization

Crystal Properties
Matthews coefficientSolvent content
3.261.56

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 105.56α = 90
b = 129.524β = 90
c = 216.643γ = 90
Symmetry
Space GroupI 2 2 2

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray295PIXELPSI PILATUS 6M2009-04-29MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONSLS BEAMLINE X06SA1SLSX06SA

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.3111.1799.5962803628033

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-Work (Depositor)R-Work (DCC)R-Free (Depositor)R-Free (DCC)R-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT2JF72.347.756280362803328899.30.153320.151270.160.192310.19RANDOM45.316
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
3.86-1.16-2.7
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg35.02
r_dihedral_angle_4_deg21.635
r_dihedral_angle_3_deg16.929
r_dihedral_angle_1_deg6.779
r_angle_refined_deg2.007
r_chiral_restr0.139
r_bond_refined_d0.021
r_gen_planes_refined0.011
r_bond_other_d
r_angle_other_deg
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms7532
Nucleic Acid Atoms
Solvent Atoms222
Heterogen Atoms26

Software

Software
Software NamePurpose
REFMACrefinement