6CKU
Solution structure of the zebrafish granulin AaE
SOLUTION NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 2D 1H-1H TOCSY | 0.5 mM zebrafish granulin AaE, 150 mM sodium chloride and 0.2mM EDTA pH 6.8 90%, H2O/10% D2O | 90% H2O/10% D2O | 150 mM | 6.8 | 760 mmHg | 298 | Bruker AVANCE 500 |
2 | 2D 1H-1H COSY | 0.5 mM zebrafish granulin AaE, 150 mM sodium chloride and 0.2mM EDTA pH 6.8 90%, H2O/10% D2O | 90% H2O/10% D2O | 150 mM | 6.8 | 760 mmHg | 298 | Bruker AVANCE 500 |
3 | 2D 1H-1H NOESY | 0.5 mM zebrafish granulin AaE, 150 mM sodium chloride and 0.2mM EDTA pH 6.8 90%, H2O/10% D2O | 90% H2O/10% D2O | 150 mM | 6.8 | 760 mmHg | 298 | Bruker AVANCE 800 |
4 | 2D 1H-15N HSQC | 0.5 mM [U-15N] zebrafish granulin AaE, 10mM sodium phosphate, 150 mM sodium chloride and 0.2mM EDTA pH 6.8 | 90% H2O/10% D2O | 150 mM | 6.8 | 760 mmHg | 298 | Bruker AVANCE 800 |
NMR Spectrometer Information | |||
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Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | AVANCE | 500 |
2 | Bruker | AVANCE | 800 |
NMR Refinement | ||
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Method | Details | Software |
molecular dynamics | ARIA |
NMR Ensemble Information | |
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Conformer Selection Criteria | target function |
Conformers Calculated Total Number | 16 |
Conformers Submitted Total Number | 16 |
Representative Model | 1 (closest to the average) |
Computation: NMR Software | ||||
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# | Classification | Version | Software Name | Author |
1 | refinement | CNS | 1.0 | Brunger et al. |
2 | refinement | ARIA | Nilges et al. | |
3 | chemical shift assignment | NMRView | Johnson et al. | |
4 | peak picking | NMRView | Johnson et al. | |
5 | structure calculation | CNS | 1.0 | Brunger et al. |
6 | structure calculation | ARIA | Nilges et al. |