6CZT
CS-rosetta determined structures of the N-terminal domain of AlgF from P. aeruginosa
SOLUTION NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 2D 1H-15N HSQC | 50 mM potassium phosphate, 2 % v/v glycerol, 10 mM DTT | 90% H2O/10% D2O | 0.05 M | 6.8 | 1 atm | 298 | Varian INOVA 500 |
2 | 3D HNCACB | 50 mM potassium phosphate, 2 % v/v glycerol, 10 mM DTT | 90% H2O/10% D2O | 0.05 M | 6.8 | 1 atm | 298 | Varian INOVA 500 |
3 | 3D HNCO | 50 mM potassium phosphate, 2 % v/v glycerol, 10 mM DTT | 90% H2O/10% D2O | 0.05 M | 6.8 | 1 atm | 298 | Varian INOVA 500 |
4 | 3D HNCA | 50 mM potassium phosphate, 2 % v/v glycerol, 10 mM DTT | 90% H2O/10% D2O | 0.05 M | 6.8 | 1 atm | 298 | Varian INOVA 500 |
5 | 3D CBCA(CO)NH | 50 mM potassium phosphate, 2 % v/v glycerol, 10 mM DTT | 90% H2O/10% D2O | 0.05 M | 6.8 | 1 atm | 298 | Varian INOVA 500 |
8 | 3D HCCH-TOCSY | 50 mM potassium phosphate, 2 % v/v glycerol, 10 mM DTT | 90% H2O/10% D2O | 0.05 M | 6.8 | 1 atm | 298 | Varian INOVA 500 |
7 | 3D C(CO)NH | 50 mM potassium phosphate, 2 % v/v glycerol, 10 mM DTT | 90% H2O/10% D2O | 0.05 M | 6.8 | 1 atm | 298 | Varian INOVA 500 |
6 | 3D 1H-15N NOESY | 50 mM potassium phosphate, 2 % v/v glycerol, 10 mM DTT | 90% H2O/10% D2O | 0.05 M | 6.8 | 1 atm | 298 | Varian INOVA 800 |
9 | 3D 1H-13C NOESY aliphatic | 50 mM potassium phosphate, 2 % v/v glycerol, 10 mM DTT | 90% H2O/10% D2O | 0.05 M | 6.8 | 1 atm | 298 | Varian INOVA 800 |
10 | 3D 1H-13C NOESY aromatic | 50 mM potassium phosphate, 2 % v/v glycerol, 10 mM DTT | 90% H2O/10% D2O | 0.05 M | 6.8 | 1 atm | 298 | Varian INOVA 800 |
NMR Spectrometer Information | |||
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Spectrometer | Manufacturer | Model | Field Strength |
1 | Varian | INOVA | 500 |
2 | Varian | INOVA | 800 |
NMR Refinement | ||
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Method | Details | Software |
molecular dynamics | CS-ROSETTA |
NMR Ensemble Information | |
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Conformer Selection Criteria | structures with the lowest energy |
Conformers Calculated Total Number | 3000 |
Conformers Submitted Total Number | 10 |
Representative Model | 1 (lowest energy) |
Computation: NMR Software | ||||
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# | Classification | Version | Software Name | Author |
1 | refinement | CS-ROSETTA | Shen, Vernon, Baker and Bax | |
2 | chemical shift assignment | NMRView | Johnson, One Moon Scientific | |
3 | chemical shift assignment | CcpNMR | CCPN | |
4 | processing | NMRPipe | Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax | |
5 | structure calculation | CS-ROSETTA | Shen, Vernon, Baker and Bax |