X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION277MPEG 2000, ammonium sulfate, Na cacodylate
Crystal Properties
Matthews coefficientSolvent content
2.1542.82

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 58.451α = 90
b = 66.792β = 90
c = 67.951γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELDECTRIS EIGER X 16M2021-11-21MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONAPS BEAMLINE 22-ID1.00APS22-ID

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)CC (Half)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.7329.9996.70.99520.5427496
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)CC (Half)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.731.7890.712

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-WorkR-FreeMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT3IXF1.7329.9927496127196.6940.1840.18260.206825.796
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
1.553-0.493-1.06
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg36.127
r_dihedral_angle_4_deg19.291
r_dihedral_angle_3_deg17.139
r_lrange_it6.359
r_lrange_other6.353
r_dihedral_angle_1_deg5.66
r_scangle_it3.596
r_scangle_other3.588
r_mcangle_other2.595
r_mcangle_it2.594
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg36.127
r_dihedral_angle_4_deg19.291
r_dihedral_angle_3_deg17.139
r_lrange_it6.359
r_lrange_other6.353
r_dihedral_angle_1_deg5.66
r_scangle_it3.596
r_scangle_other3.588
r_mcangle_other2.595
r_mcangle_it2.594
r_scbond_it2.377
r_scbond_other2.371
r_angle_refined_deg2.011
r_mcbond_it1.649
r_mcbond_other1.648
r_angle_other_deg1.568
r_nbd_refined0.255
r_symmetry_nbd_refined0.238
r_nbd_other0.236
r_symmetry_xyhbond_nbd_refined0.229
r_symmetry_nbd_other0.203
r_nbtor_refined0.184
r_xyhbond_nbd_refined0.182
r_chiral_restr0.117
r_symmetry_nbtor_other0.085
r_symmetry_xyhbond_nbd_other0.023
r_bond_refined_d0.013
r_gen_planes_refined0.011
r_gen_planes_other0.005
r_bond_other_d0.002
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms2131
Nucleic Acid Atoms
Solvent Atoms107
Heterogen Atoms160

Software

Software
Software NamePurpose
REFMACrefinement
HKL-2000data reduction
SCALEPACKdata scaling
PHASERphasing