Experiment: 7W62

X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
Type	Source	Accession Code	Details
experimental model	PDB	7DED

Crystallization

Crystalization Experiments
ID	Method	pH	Temperature	Details
1	MICROBATCH	6	295	Tacsimate pH 6.0, 0.1 M MES monohydrate pH 6.0, 25% (w/v) polyethylene glycol 4000

Crystal Properties
Matthews coefficient	Solvent content
2.9	57.75

Crystal Data

Unit Cell
Length ( Å )	Angle ( ˚ )
a = 96.21	α = 90
b = 168.3	β = 90
c = 170.249	γ = 90

Symmetry
Space Group	P 21 21 21

Diffraction

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray	100	PIXEL	DECTRIS PILATUS 6M		2021-08-05	M	SINGLE WAVELENGTH

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	SYNCHROTRON	ELETTRA BEAMLINE 11.2C	1.0	ELETTRA	11.2C

Data Collection

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	R Merge I (Observed)	CC (Half)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	2	96.21	100	0.14	0.99	12.1	12		2231847

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	R Merge I (Observed)	CC (Half)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
1	2	2.11			1.33	0.68

Refinement

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Starting model	Resolution (High)	Resolution (Low)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (All)	R-Work (Depositor)	R-Work (DCC)	R-Free (Depositor)	R-Free (DCC)	Mean Isotropic B
X-RAY DIFFRACTION	MOLECULAR REPLACEMENT	THROUGHOUT	7DED	2	85.27	186265	9317	99.946	0.227	0.2259	0.23	0.2496	0.25	34.575

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]
3.349			-1.499		-1.851

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_2_deg	34.641
r_dihedral_angle_3_deg	11.931
r_dihedral_angle_4_deg	10.217
r_dihedral_angle_1_deg	8.062
r_lrange_it	7.442
r_lrange_other	7.433
r_scangle_it	5.86
r_scangle_other	5.86
r_mcangle_other	4.358
r_mcangle_it	4.357

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_2_deg	34.641
r_dihedral_angle_3_deg	11.931
r_dihedral_angle_4_deg	10.217
r_dihedral_angle_1_deg	8.062
r_lrange_it	7.442
r_lrange_other	7.433
r_scangle_it	5.86
r_scangle_other	5.86
r_mcangle_other	4.358
r_mcangle_it	4.357
r_scbond_it	4.047
r_scbond_other	4.047
r_mcbond_it	3.092
r_mcbond_other	3.088
r_angle_other_deg	2.365
r_angle_refined_deg	1.619
r_nbd_other	0.284
r_symmetry_nbd_refined	0.272
r_symmetry_nbd_other	0.213
r_symmetry_xyhbond_nbd_refined	0.183
r_nbd_refined	0.173
r_nbtor_refined	0.162
r_xyhbond_nbd_refined	0.154
r_chiral_restr	0.08
r_symmetry_nbtor_other	0.079
r_ncsr_local_group_16	0.061
r_ncsr_local_group_15	0.058
r_ncsr_local_group_22	0.057
r_ncsr_local_group_52	0.057
r_ncsr_local_group_67	0.057
r_ncsr_local_group_18	0.056
r_ncsr_local_group_39	0.056
r_ncsr_local_group_20	0.055
r_ncsr_local_group_25	0.055
r_ncsr_local_group_55	0.055
r_ncsr_local_group_23	0.054
r_ncsr_local_group_50	0.054
r_ncsr_local_group_65	0.054
r_ncsr_local_group_46	0.052
r_ncsr_local_group_27	0.051
r_ncsr_local_group_48	0.051
r_ncsr_local_group_78	0.051
r_ncsr_local_group_88	0.051
r_ncsr_local_group_4	0.049
r_ncsr_local_group_37	0.049
r_ncsr_local_group_51	0.049
r_ncsr_local_group_81	0.049
r_ncsr_local_group_1	0.048
r_ncsr_local_group_6	0.048
r_ncsr_local_group_14	0.048
r_ncsr_local_group_29	0.048
r_ncsr_local_group_47	0.048
r_ncsr_local_group_54	0.048
r_ncsr_local_group_66	0.048
r_ncsr_local_group_70	0.048
r_ncsr_local_group_19	0.047
r_ncsr_local_group_41	0.047
r_ncsr_local_group_49	0.047
r_ncsr_local_group_68	0.047
r_ncsr_local_group_79	0.047
r_ncsr_local_group_44	0.046
r_ncsr_local_group_64	0.046
r_ncsr_local_group_21	0.044
r_ncsr_local_group_24	0.044
r_ncsr_local_group_33	0.044
r_ncsr_local_group_86	0.044
r_ncsr_local_group_90	0.044
r_symmetry_xyhbond_nbd_other	0.043
r_ncsr_local_group_42	0.043
r_ncsr_local_group_8	0.042
r_ncsr_local_group_56	0.042
r_ncsr_local_group_69	0.042
r_ncsr_local_group_3	0.041
r_ncsr_local_group_10	0.041
r_ncsr_local_group_13	0.041
r_ncsr_local_group_17	0.041
r_ncsr_local_group_40	0.041
r_ncsr_local_group_85	0.041
r_ncsr_local_group_26	0.04
r_ncsr_local_group_34	0.04
r_ncsr_local_group_36	0.04
r_ncsr_local_group_38	0.04
r_ncsr_local_group_45	0.04
r_ncsr_local_group_77	0.04
r_ncsr_local_group_71	0.039
r_ncsr_local_group_76	0.039
r_ncsr_local_group_53	0.038
r_ncsr_local_group_82	0.038
r_ncsr_local_group_87	0.038
r_ncsr_local_group_43	0.037
r_ncsr_local_group_60	0.037
r_bond_other_d	0.036
r_ncsr_local_group_80	0.036
r_ncsr_local_group_58	0.035
r_ncsr_local_group_73	0.035
r_ncsr_local_group_63	0.034
r_ncsr_local_group_91	0.034
r_ncsr_local_group_83	0.033
r_ncsr_local_group_11	0.032
r_ncsr_local_group_2	0.031
r_ncsr_local_group_61	0.031
r_ncsr_local_group_89	0.03
r_ncsr_local_group_32	0.029
r_ncsr_local_group_74	0.029
r_ncsr_local_group_31	0.028
r_ncsr_local_group_30	0.027
r_ncsr_local_group_5	0.023
r_ncsr_local_group_9	0.023
r_ncsr_local_group_12	0.023
r_ncsr_local_group_35	0.023
r_ncsr_local_group_28	0.022
r_ncsr_local_group_59	0.022
r_ncsr_local_group_84	0.022
r_ncsr_local_group_7	0.018
r_ncsr_local_group_57	0.018
r_ncsr_local_group_72	0.018
r_ncsr_local_group_75	0.018
r_chiral_restr_other	0.016
r_bond_refined_d	0.013
r_gen_planes_other	0.012
r_ncsr_local_group_62	0.008
r_gen_planes_refined	0.007