4YLH


YE1: [(2R,3S,4R,5R)-5-(6-AMINO-9H-PURIN-9-YL)-4-HYDROXY-3-(PHOSPHONOOXY)TETRAHYDROFURAN-2-YL]METHYL (3R)-4-({3-[(2-{[(3,5-DIHYDROXYPHENYL)ACETYL]AMINO}ETHYL)AMINO]-3-OXOPROPYL}AMINO)-3-HYDROXY-2,2-DIMETHYL-4-OXOBUTYL DIHYDROGEN DIPHOSPHATE

YE1 is a Ligand Of Interest in 4YLH designated by the RCSB
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Created with Raphaël 2.3.0WorseGeometryBetterWorseExperiment Data FittingBetter4YLH_YE1_D_502Click to see a 3Delectron density viewof this ligand instance
Created with Raphaël 2.3.0WorseGeometryBetterWorseExperiment Data FittingBetter4YLH_YE1_D_502Click to see a 3Delectron density viewof this ligand instance
Created with Raphaël 2.3.0
Best-fitted instance in this entry
Created with Raphaël 2.3.0
Other instances in this entry
Created with Raphaël 2.3.0
Best-fitted instance in this entry
Created with Raphaël 2.3.0
Best-fitted PDB instances with same target (top 5)
IdentifierRanking for goodness of fit Ranking for geometry Real space R factor Real space correlation coefficient RMSZ-bond-length RMSZ-bond-angleOutliers of bond length Outliers of bond angle Atomic clashesStereochemical errorsModel completenessAverage occupancy
4YLH_YE1_D_502 83% 11% 0.119 0.9792.55 1.68 21 1520100%1
4YLH_YE1_C_502 81% 7% 0.124 0.9783.39 1.59 26 1430100%1
4YLH_YE1_B_502 77% 12% 0.133 0.9732.49 1.62 21 1630100%1
4YLH_YE1_K_502 77% 12% 0.136 0.9762.47 1.61 16 1300100%1
4YLH_YE1_G_502 77% 10% 0.137 0.9762.73 1.59 21 1730100%1
4YLH_YE1_F_502 77% 10% 0.138 0.9772.52 1.86 20 24 30100%1
4YLH_YE1_J_502 75% 10% 0.13 0.9642.81 1.54 18 11130100%1
4YLH_YE1_L_502 74% 8% 0.143 0.9752.76 1.85 22 1710100%1
4YLH_YE1_A_502 73% 11% 0.144 0.9722.58 1.61 17 1510100%1
4YLH_YE1_H_502 70% 10% 0.149 0.9672.65 1.71 20 1550100%1
4YLH_YE1_E_502 68% 13% 0.157 0.9692.42 1.59 15 1240100%1
4YLH_YE1_I_502 63% 12% 0.157 0.9522.47 1.61 16 1350100%1
5KAG_YE1_C_501 76% 25% 0.125 0.9631.8 1.28 6 720100%1
5KAH_YE1_F_501 61% 20% 0.172 0.9612.02 1.36 9 960100%1
2NP9_YE1_C_999 46% 12% 0.167 0.9021.87 2.18 9 12150100%1
2PG8_YE1_C_999 14% 12% 0.327 0.8781.87 2.23 9 13180100%1