Ligand validation:9GO2


RET: RETINAL

RET is a Ligand Of Interest in 9GO2 designated by the Author


Created with Raphaël 2.3.0WorseGeometryBetterWorseExperiment Data FittingBetter9GO2_RET_A_710Click to see a 3Delectron density viewof this ligand instance
Created with Raphaël 2.3.0WorseGeometryBetterWorseExperiment Data FittingBetter9GO2_RET_A_710Click to see a 3Delectron density viewof this ligand instance
Created with Raphaël 2.3.0WorseGeometryBetterWorseExperiment Data FittingBetter9GO2_RET_A_710Click to see a 3Delectron density viewof this ligand instance
Created with Raphaël 2.3.0
Best-fitted instance in this entry
Created with Raphaël 2.3.0
Other instances in this entry
Created with Raphaël 2.3.0
Best-fitted instance in this entry
Created with Raphaël 2.3.0
Best-fitted PDB instances with same target (top 5)
Created with Raphaël 2.3.0
Best-fitted instance in this entry
Created with Raphaël 2.3.0
Best-fitted PDB instances with different target (top 5)
IdentifierRanking for goodness of fit Ranking for geometry Real space R factor Real space correlation coefficient RMSZ-bond-length RMSZ-bond-angleOutliers of bond length Outliers of bond angle Atomic clashesStereochemical errorsModel completenessAverage occupancy
9GO2_RET_A_710 56% 66% 0.107 0.8770.73 0.59 1 160100%0.5
3UG9_RET_A_401 81% 34% 0.093 0.9450.59 1.98 - 850100%1
9GO1_RET_A_410 77% 66% 0.084 0.9210.74 0.59 1 160100%1
4YZI_RET_A_401 66% 41% 0.12 0.9260.79 1.47 - 360100%1
7C86_RET_A_401 28% 12% 0.224 0.8772.8 1.35 6 460100%1
6CSO_RET_A_401 16% 6% 0.313 0.8890.73 4.28 - 1540100%1
4OV0_RET_A_301 100% 8% 0.027 0.9920.76 3.77 - 1580100%1
9F9J_RET_A_317 100% 71% 0.026 0.9910.7 0.44 1 -50100%1
3UTY_RET_A_301 100% 5% 0.028 0.9922.48 2.7 6 1220100%1
3UTX_RET_B_301 100% 6% 0.042 0.9882.42 2.7 5 1240100%1
7XJE_RET_A_301 99% 6% 0.048 0.9831.99 2.98 4 1430100%1