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232,059 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Structure Author = "Dong, C.J."

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Search Summary

This query matches 18 Structures.

Refinements

Structure Determination Methodology

experimental (18)

Scientific Name of Source Organism

	Escherichia coli K-12 (6)
	Escherichia coli (4)
	Escherichia coli 2.3916 (4)
	Escherichia coli 909945-2 (4)
	Escherichia coli B185 (4)
	Shigella flexneri (3)
	Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 (2)
	Escherichia coli BL21(DE3) (1)
	Pseudomonas aeruginosa (1)
	Schmallenberg virus (1)

More...

Taxonomy

	Bacteria (17)
	Riboviria (1)

Experimental Method

	ELECTRON MICROSCOPY (13)
	X-RAY DIFFRACTION (5)

Polymer Entity Type

	Protein (18)
	RNA (1)

Refinement Resolution (Å)

	1.5 - 2.0 (2)
	2.0 - 2.5 (2)
	2.5 - 3.0 (1)
	3.0 - 3.5 (7)
	3.5 - 4.0 (4)
	4.0 - 4.5 (2)

Release Date

	2000 - 2004 (1)
	2010 - 2014 (1)
	2015 - 2019 (4)
	2020 - 2024 (12)

Enzyme Classification Name

	Translocases (9)
	Transferases (2)
	Isomerases (1)

Membrane Protein Annotation

	MemProtMD (11)
	OPM (11)
	PDBTM (11)
	mpstruc (11)

Symmetry Type

	Asymmetric (12)
	Cyclic (6)

SCOP Classification

	Artifacts (2)
	Membrane and cell surface proteins and peptides (1)
	Alpha and beta proteins (a/b) (1)
	All beta proteins (1)

AllSelected

1 to 18 of 18 Structures

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1RTV	Download File View File

RmlC (dTDP-6-deoxy-D-xylo-4-hexulose 3,5-epimerase) crystal structure from Pseudomonas aeruginosa, apo structure

Dong, C.J., Naismith, J.H.

To be published

Released	2004-03-02
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Pseudomonas aeruginosa
Macromolecule	dTDP-4-dehydrorhamnose 3,5-epimerase (protein)
Unique Ligands	SRT

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4JNG	Download File View File

Schmallenberg virus nucleoprotein-RNA complex

Dong, H.H., Li, P., Bottcher, B., Elliott, R.M., Dong, C.J.

(2013) RNA 19: 1129-1136

Released	2013-07-31
Method	X-RAY DIFFRACTION 2.12 Å
Organisms	Schmallenberg virus
Macromolecule	Nucleocapsid protein (protein) RNA (42-MER) (nucleic acid)

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5ONU	Download File View File

Trimeric OmpU structure

Li, H.Y., Dong, C.J.

(2018) Acta Crystallogr D Struct Biol 74: 21-29

Released	2018-01-03
Method	X-RAY DIFFRACTION 2.22 Å
Organisms	Vibrio cholerae
Macromolecule	Outer membrane protein OmpU (protein)
Unique Ligands	C8E, GOL, LDA

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6S8G	Download File View File

Cryo-EM structure of LptB2FGC in complex with AMP-PNP

Tang, X.D., Chang, S.H., Luo, Q.H., Zhang, Z.Y., Qiao, W., Xu, C.H., Zhang, C.B., Niu, Y., Yang, W.X., Wang, T., Zhang, Z.B., Zhu, X.F., Dong, C.J., Zhang, X., Dong, H.H.

(2019) Nat Commun 10: 4175-4175

Released	2019-09-25
Method	ELECTRON MICROSCOPY 3.5 Å
Organisms	Shigella flexneri
Macromolecule	Inner membrane protein yjgQ (protein) LPS export ABC transporter permease LptF (protein) Lipopolysaccharide ABC transporter, ATP-binding protein LptB (protein)
Unique Ligands	ANP, LMD

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6S8H	Download File View File

Cryo-EM structure of LptB2FG in complex with LPS

Tang, X.D., Chang, S.H., Luo, Q.H., Zhang, Z.Y., Qiao, W., Xu, C.H., Zhang, C.B., Niu, Y., Yang, W.X., Wang, T., Zhang, Z.B., Zhu, X.F., Dong, C.J., Zhang, X., Dong, H.H.

(2019) Nat Commun 10: 4175-4175

Released	2019-09-25
Method	ELECTRON MICROSCOPY 3.7 Å
Organisms	Shigella flexneri
Macromolecule	Inner membrane protein yjgQ (protein) Lipopolysaccharide ABC transporter, ATP-binding protein LptB (protein) Lipopolysaccharide export system permease protein LptF (protein)
Unique Ligands	DCQ, JSG, LMN, LMT

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6S8N	Download File View File

Cryo-EM structure of LptB2FGC in complex with lipopolysaccharide

Tang, X.D., Chang, S.H., Luo, Q.H., Zhang, Z.Y., Qiao, W., Xu, C.H., Zhang, C.B., Niu, Y., Yang, W.X., Wang, T., Zhang, Z.B., Zhu, X.F., Dong, C.J., Zhang, X., Dong, H.H.

(2019) Nat Commun 10: 4175-4175

Released	2019-09-25
Method	ELECTRON MICROSCOPY 3.1 Å
Organisms	Shigella flexneri
Macromolecule	Inner membrane protein yjgQ (protein) Lipopolysaccharide ABC transporter, ATP-binding protein LptB (protein) Lipopolysaccharide export system permease protein LptF (protein) Lipopolysaccharide export system protein LptC (protein)
Unique Ligands	DCQ, L0W, LMN, LMT

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6Y6G	Download File View File

lipopolysaccharide outer core galactosyltransferase WaaB apo form

Zhang, Z.Y., Ashworth, G., Wang, Z.S., Zhu, X.F., Dong, C.J.

To be published

Released	2021-03-31
Method	X-RAY DIFFRACTION 1.81 Å
Organisms	Salmonella enterica subsp. enterica serovar Typhimurium str. LT2
Macromolecule	Lipopolysaccharide 1,6-galactosyltransferase (protein)

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6Y6I	Download File View File

lipopolysaccharide outer core galactosyltransferase WaaB and UDP complex

Zhang, Z.Y., Ashworth, G., Wang, Z.S., Zhu, X.F., Dong, C.J.

To be published

Released	2021-03-31
Method	X-RAY DIFFRACTION 1.92 Å
Organisms	Salmonella enterica subsp. enterica serovar Typhimurium str. LT2
Macromolecule	Lipopolysaccharide 1,6-galactosyltransferase (protein)
Unique Ligands	UDP

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6ZY2	Download File View File

Cryo-EM structure of apo MlaFEDB

Dong, C.J., Dong, H.H.

(2021) Nat Struct Mol Biol 28: 81-91

Released	2020-11-25
Method	ELECTRON MICROSCOPY 3.6 Å
Organisms	Escherichia coli Escherichia coli 2.3916 Escherichia coli 909945-2 Escherichia coli B185
Macromolecule	ABC transporter maintaining OM lipid asymmetry, cytoplasmic STAS component (protein) Toluene tolerance protein Ttg2A (protein) Uncharacterized protein (protein) YrbD protein (protein)

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6ZY3	Download File View File

Cryo-EM structure of MlaFEDB in complex with phospholipid

Dong, C.J., Dong, H.H.

(2021) Nat Struct Mol Biol 28: 81-91

Released	2020-11-25
Method	ELECTRON MICROSCOPY 3.3 Å
Organisms	Escherichia coli Escherichia coli 2.3916 Escherichia coli 909945-2 Escherichia coli B185
Macromolecule	ABC transporter maintaining OM lipid asymmetry, cytoplasmic STAS component (protein) Toluene tolerance protein Ttg2A (protein) Uncharacterized protein (protein) YrbD protein (protein)
Unique Ligands	PEE

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6ZY4	Download File View File

Cryo-EM structure of MlaFEDB in complex with ADP

Dong, C.J., Dong, H.H.

(2021) Nat Struct Mol Biol 28: 81-91

Released	2020-11-25
Method	ELECTRON MICROSCOPY 4.1 Å
Organisms	Escherichia coli Escherichia coli 2.3916 Escherichia coli 909945-2 Escherichia coli B185
Macromolecule	ABC transporter maintaining OM lipid asymmetry, cytoplasmic STAS component (protein) Toluene tolerance protein Ttg2A (protein) Uncharacterized protein (protein) YrbD protein (protein)
Unique Ligands	ADP, MG

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6ZY9	Download File View File

Cryo-EM structure of MlaFEDB in complex with AMP-PNP

Dong, C.J., Dong, H.H.

(2021) Nat Struct Mol Biol 28: 81-91

Released	2020-11-25
Method	ELECTRON MICROSCOPY 3.3 Å
Organisms	Escherichia coli Escherichia coli 2.3916 Escherichia coli 909945-2 Escherichia coli B185
Macromolecule	ABC transporter maintaining OM lipid asymmetry, cytoplasmic STAS component (protein) Toluene tolerance protein Ttg2A (protein) Uncharacterized protein (protein) YrbD protein (protein)
Unique Ligands	ANP, MG

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7ARH	Download File View File

LolCDE in complex with lipoprotein

Tang, X.D., Chang, S.H., Zhang, K., Wang, T., Luo, Q.H., Qiao, W., Wang, C., Zhang, Z.B., Zhang, Z.Y., Zhu, X.F., Dong, C.J., Zhang, X., Dong, H.H.

(2021) Nat Struct Mol Biol 28: 347-355

Released	2021-04-07
Method	ELECTRON MICROSCOPY 3.3 Å
Organisms	Escherichia coli K-12
Macromolecule	LPP (protein) Lipoprotein-releasing ABC transporter permease subunit LolC (protein) Lipoprotein-releasing system ATP-binding protein LolD (protein) Lipoprotein-releasing system transmembrane protein LolE (protein)
Unique Ligands	PLM, Z41

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7ARI	Download File View File

LolCDE apo structure

Tang, X.D., Chang, S.H., Zhang, K., Wang, T., Luo, Q.H., Qiao, W., Wang, C., Zhang, Z.B., Zhang, Z.Y., Zhu, X.F., Dong, C.J., Zhang, X., Dong, H.H.

(2021) Nat Struct Mol Biol 28: 347-355

Released	2021-04-07
Method	ELECTRON MICROSCOPY 3.4 Å
Organisms	Escherichia coli K-12
Macromolecule	Lipoprotein-releasing ABC transporter permease subunit LolC (protein) Lipoprotein-releasing system ATP-binding protein LolD (protein) Lipoprotein-releasing system transmembrane protein LolE (protein)

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7ARJ	Download File View File

LolCDE in complex with lipoprotein and AMPPNP complex undimerized form

Tang, X.D., Chang, S.H., Zhang, K., Wang, T., Luo, Q.H., Qiao, W., Wang, C., Zhang, Z.B., Zhang, Z.Y., Zhu, X.F., Dong, C.J., Zhang, X., Dong, H.H.

(2021) Nat Struct Mol Biol 28: 347-355

Released	2021-04-07
Method	ELECTRON MICROSCOPY 3.2 Å
Organisms	Escherichia coli K-12
Macromolecule	LPP (protein) Lipoprotein-releasing ABC transporter permease subunit LolC (protein) Lipoprotein-releasing system ATP-binding protein LolD (protein) Lipoprotein-releasing system transmembrane protein LolE (protein)
Unique Ligands	ANP, MG, PLM, Z41

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7ARK	Download File View File

LolCDE in complex with AMP-PNP in the closed NBD state

Tang, X.D., Chang, S.H., Zhang, K., Wang, T., Luo, Q.H., Qiao, W., Wang, C., Zhang, Z.B., Zhang, Z.Y., Zhu, X.F., Dong, C.J., Zhang, X., Dong, H.H.

(2021) Nat Struct Mol Biol 28: 347-355

Released	2021-04-07
Method	ELECTRON MICROSCOPY 4.1 Å
Organisms	Escherichia coli K-12
Macromolecule	Lipoprotein-releasing ABC transporter permease subunit LolC (protein) Lipoprotein-releasing system ATP-binding protein LolD (protein) Lipoprotein-releasing system transmembrane protein LolE (protein)
Unique Ligands	ANP, MG

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7ARL	Download File View File

LolCDE in complex with lipoprotein and ADP

Tang, X.D., Chang, S.H., Zhang, K., Wang, T., Luo, Q.H., Qiao, W., Wang, C., Shen, C.R., Zhang, Z.B., Zhang, Z.Y., Zhu, X.F., Wei, X.W., Dong, C.J., Zhang, X., Dong, H.H.

(2021) Nat Struct Mol Biol 28: 347-355

Released	2021-04-07
Method	ELECTRON MICROSCOPY 3.2 Å
Organisms	Escherichia coli K-12
Macromolecule	LPP (protein) Lipoprotein-releasing ABC transporter permease subunit LolC (protein) Lipoprotein-releasing system ATP-binding protein LolD (protein) Lipoprotein-releasing system transmembrane protein LolE (protein)
Unique Ligands	ADP, MG, PLM, Z41

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7ARM	Download File View File

LolCDE in complex with lipoprotein and LolA

Tang, X.D., Chang, S.H., Zhang, K., Wang, T., Luo, Q.H., Qiao, W., Wang, C., Shen, C.R., Zhang, Z.B., Zhang, Z.Y., Zhu, X.F., Wei, X.W., Dong, C.J., Zhang, X., Dong, H.H.

(2021) Nat Struct Mol Biol 28: 347-355

Released	2021-04-07
Method	ELECTRON MICROSCOPY 3.6 Å
Organisms	Escherichia coli BL21(DE3) Escherichia coli K-12
Macromolecule	LPP (protein) Lipoprotein-releasing ABC transporter permease subunit LolC (protein) Lipoprotein-releasing system ATP-binding protein LolD (protein) Lipoprotein-releasing system transmembrane protein LolE (protein) Outer-membrane lipoprotein carrier protein (protein)
Unique Ligands	PLM, Z41

1 to 18 of 18 Structures

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