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232,418 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Structure Author = "Du, Q."

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Search Summary

This query matches 29 Structures.

Refinements

Structure Determination Methodology

experimental (29)

Scientific Name of Source Organism

	Betapolyomavirus macacae (6)
	Saccharomyces cerevisiae (5)
	Bacillus anthracis (4)
	Homo sapiens (4)
	JC polyomavirus (4)
	Bos taurus (3)
	synthetic construct (2)
	Alphapolyomavirus muris (1)
	Anolis carolinensis (1)
	Human immunodeficiency virus 1 (1)

More...

Taxonomy

	Eukaryota (13)
	Monodnaviria (13)
	Bacteria (5)
	other sequences (2)
	Eukaryota (eukaryotes) (1)
	Riboviria (1)

Experimental Method

X-RAY DIFFRACTION (29)

Polymer Entity Type

	Protein (29)
	DNA (6)
	RNA (1)

Refinement Resolution (Å)

	1.0 - 1.5 (3)
	1.5 - 2.0 (5)
	2.0 - 2.5 (5)
	2.5 - 3.0 (12)
	3.0 - 3.5 (3)
	3.5 - 4.0 (1)

Release Date

	1990 - 1994 (1)
	1995 - 1999 (3)
	2000 - 2004 (5)
	2005 - 2009 (7)
	2010 - 2014 (9)
	2015 - 2019 (4)

Enzyme Classification Name

	Isomerases (11)
	Hydrolases (9)
	Transferases (5)
	Lyases (4)

Membrane Protein Annotation

OPM (2)

Symmetry Type

	Asymmetric (22)
	Cyclic (9)
	Dihedral (1)
	Helical (1)

SCOP Classification

	Alpha and beta proteins (a+b) (15)
	All alpha proteins (12)
	Artifacts (6)
	Multi-domain proteins (alpha and beta) (4)
	All beta proteins (5)
	Alpha and beta proteins (a/b) (2)

AllSelected

1 to 25 of 29 Structures

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1FA0	Download File View File

STRUCTURE OF YEAST POLY(A) POLYMERASE BOUND TO MANGANATE AND 3'-DATP

Bard, J., Zhelkovsky, A.M., Helmling, S., Moore, C.L., Bohm, A.

(2000) Science 289: 1346-1349

Released	2000-08-30
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	POLY(A)-POLYMERASE (protein)
Unique Ligands	3AD, 3AT, MN, POP

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1GOT	Download File View File

HETEROTRIMERIC COMPLEX OF A GT-ALPHA/GI-ALPHA CHIMERA AND THE GT-BETA-GAMMA SUBUNITS

Lambright, D.G., Sondek, J., Bohm, A., Skiba, N.P., Hamm, H.E., Sigler, P.B.

(1996) Nature 379: 311-319

Released	1997-03-12
Method	X-RAY DIFFRACTION 2 Å
Organisms	Bos taurus
Macromolecule	GT-ALPHA/GI-ALPHA CHIMERA (protein) GT-BETA (protein) GT-GAMMA (protein)
Unique Ligands	GDP

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1HMC	Download File View File

THREE-DIMENSIONAL STRUCTURE OF DIMERIC HUMAN RECOMBINANT MACROPHAGE COLONY STIMULATING FACTOR

Bohm, A., Pandit, J., Jancarik, J., Halenbeck, R., Koths, K., Kim, S.-H.

(1992) Science 258: 1358-1362

Released	1994-04-30
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Homo sapiens
Macromolecule	HUMAN MACROPHAGE COLONY STIMULATING FACTOR (protein)

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1K8T	Download File View File

Crystal structure of the adenylyl cyclase domain of anthrax edema factor (EF)

Drum, C.L., Yan, S.-Z., Bard, J., Shen, Y.-Q., Lu, D., Soelaiman, S., Grabarek, Z., Bohm, A., Tang, W.-J.

(2002) Nature 415: 396-402

Released	2002-01-23
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Bacillus anthracis
Macromolecule	CALMODULIN-SENSITIVE ADENYLATE CYCLASE (protein)
Unique Ligands	NI, SO4

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1K90	Download File View File

Crystal structure of the adenylyl cyclase domain of anthrax edema factor (EF) in complex with calmodulin and 3' deoxy-ATP

Drum, C.L., Yan, S.-Z., Bard, J., Shen, Y.-Q., Lu, D., Soelaiman, S., Grabarek, Z., Bohm, A., Tang, W.-J.

(2002) Nature 415: 396-402

Released	2002-01-23
Method	X-RAY DIFFRACTION 2.75 Å
Organisms	Bacillus anthracis Homo sapiens
Macromolecule	CALMODULIN (protein) CALMODULIN-SENSITIVE ADENYLATE CYCLASE (protein)
Unique Ligands	3AT, CA, YB

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1K93	Download File View File

Crystal structure of the adenylyl cyclase domain of anthrax edema factor (EF) in complex with calmodulin

Drum, C.L., Yan, S.-Z., Bard, J., Shen, Y.-Q., Lu, D., Soelaiman, S., Grabarek, Z., Bohm, A., Tang, W.-J.

(2002) Nature 415: 396-402

Released	2002-01-23
Method	X-RAY DIFFRACTION 2.95 Å
Organisms	Bacillus anthracis Homo sapiens
Macromolecule	CALMODULIN (protein) CALMODULIN-SENSITIVE ADENYLATE CYCLASE (protein)
Unique Ligands	CA, SO4

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1S26	Download File View File

Structure of Anthrax Edema Factor-Calmodulin-alpha,beta-methyleneadenosine 5'-triphosphate Complex Reveals an Alternative Mode of ATP Binding to the Catalytic Site

Shen, Y., Zhukovskaya, N.L., Bohm, A., Tang, W.-J.

(2004) Biochem Biophys Res Commun 317: 309-314

Released	2004-04-13
Method	X-RAY DIFFRACTION 3 Å
Organisms	Bacillus anthracis Homo sapiens
Macromolecule	Calmodulin (protein) Calmodulin-sensitive adenylate cyclase (protein)
Unique Ligands	APC, CA, YB

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1TBG	Download File View File

BETA-GAMMA DIMER OF THE HETEROTRIMERIC G-PROTEIN TRANSDUCIN

Sondek, J.S., Bohm, A., Lambright, D.G., Hamm, H.E., Sigler, P.B.

(1996) Nature 379: 369-374

Released	1997-04-01
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Bos taurus
Macromolecule	TRANSDUCIN (protein)

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2FUF	Download File View File

Crystal structure of the SV40 large T antigen origin-binding domain

Meinke, G., Bullock, P.A., Bohm, A.

(2006) J Virol 80: 4304-4312

Released	2006-08-22
Method	X-RAY DIFFRACTION 1.45 Å
Organisms	Betapolyomavirus macacae
Macromolecule	Large T antigen (protein)
Unique Ligands	FLC

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2HHP	Download File View File

Structure of yeast poly(A) polymerase in a closed conformation.

Bohm, A., Toth, J.

(2007) J Mol Biol 366: 1401-1415

Released	2007-01-23
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	Poly(A) polymerase (protein)
Unique Ligands	FLC, MG

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2IF9	Download File View File

Crystal Structure of SV40 T-antigen origin binding domain disulfide-linked dimer

Meinke, G., Bullock, P.A., Bohm, A.

(2007) PLoS Biol 5: e23-e23

Released	2007-02-13
Method	X-RAY DIFFRACTION 2.586 Å
Organisms	Betapolyomavirus macacae
Macromolecule	Large T antigen (protein)

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2NTC	Download File View File

Crystal Structure of sv40 large T antigen origin binding domain with DNA

Bohm, A., Meinke, G., Bullock, P.A.

(2007) PLoS Biol 5: e23-e23

Released	2007-02-13
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Betapolyomavirus macacae
Macromolecule	large T antigen (protein) 21-nt PEN element of the SV40 DNA origin (nucleic acid)

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2O1P	Download File View File

Structure of yeast Poly(A) Polymerase in a somewhat closed state

Bohm, A., Balbo, P., Toth, J.

(2007) J Mol Biol 366: 1401-1415

Released	2007-01-23
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	Poly(A) polymerase (protein)

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2Q66	Download File View File

Structure of Yeast Poly(A) Polymerase with ATP and oligo(A)

Bohm, A., Balbo, P.

(2007) Structure 15: 1117-1131

Released	2007-08-28
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	Poly(A) polymerase (protein) 5'-R(PAPAPAPAP*A)-3' (nucleic acid)
Unique Ligands	ATP, EDO, MG

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2TRC	Download File View File

PHOSDUCIN/TRANSDUCIN BETA-GAMMA COMPLEX

Gaudet, R., Bohm, A., Sigler, P.B.

(1996) Cell 87: 577-588

Released	1997-06-05
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Bos taurus Rattus norvegicus
Macromolecule	PHOSDUCIN (protein) TRANSDUCIN (protein)
Unique Ligands	GD

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3C66	Download File View File

Yeast poly(A) polymerase in complex with Fip1 residues 80-105

Bohm, A., Meinke, G.

(2008) Biochemistry 47: 6859-6869

Released	2008-05-20
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Saccharomyces cerevisiae Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
Macromolecule	Poly(A) polymerase (protein) Pre-mRNA polyadenylation factor FIP1 (protein)
Unique Ligands	GOL, MES

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3MI7	Download File View File

An Enhanced Repressor of Human Papillomavirus E2 Protein

Bohm, A., Baleja, J., Bose, K., Meinke, G.

(2011) FASEB J 25: 2354-2361

Released	2011-04-06
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Human papillomavirus 16
Macromolecule	Regulatory protein E2 (protein)
Unique Ligands	EDO

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3QFQ	Download File View File

Asymmetric Assembly of Merkel Cell Polyomavirus Large T-antigen Origin Binding Domains at the Viral Origin

Harrison, C.J., Meinke, G., Bohm, A.

(2011) J Mol Biol 409: 529-542

Released	2011-04-27
Method	X-RAY DIFFRACTION 2.9001 Å
Organisms	Merkel cell polyomavirus
Macromolecule	Large T antigen (protein) DNA (26-MER) (nucleic acid)

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3QGJ	Download File View File

1.3A Structure of alpha-Lytic Protease Bound to Ac-AlaAlaPro-Alanal

Everill, P., Meinke, G., Bohm, A., Bachovchin, W.

To be published

Released	2012-02-01
Method	X-RAY DIFFRACTION 1.3 Å
Organisms	Lysobacter enzymogenes
Macromolecule	Ac-AlaAlaPro-Alanal peptide (protein) Alpha-lytic protease (protein)
Unique Ligands	EDO, SO4, TFA

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3QK2	Download File View File

Structure-Based Analysis of the Interaction between the Simian Virus 40 T-Antigen Origin Binding Domain and Single-Stranded DNA

Meinke, G., Bullock, P.A., Bohm, A.

(2011) J Virol 85: 818-827

Released	2011-02-23
Method	X-RAY DIFFRACTION 1.643 Å
Organisms	Betapolyomavirus macacae
Macromolecule	Large T antigen (protein)
Unique Ligands	SCN

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4FB3	Download File View File

Polyomavirus T-ag binds symmetrical repeats at the viral origin in an asymmetrical manner

Bohm, A., Harrison, C.J., Schaffhausen, B.S., Jiang, T.

(2013) J Virol 87: 13751-13759

Released	2013-10-23
Method	X-RAY DIFFRACTION 3.79 Å
Organisms	Alphapolyomavirus muris
Macromolecule	Large T antigen (protein) ORI DNA oligonucleotide-Crick strand (nucleic acid) ORI DNA oligonucleotide-Watson strand (nucleic acid)

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4FGN	Download File View File

Crystal structure of the SV40 large T-antigen origin bining domain bound to Site I DNA

Meinke, G., Bohm, A., Bullock, P.A.

(2013) J Virol 87: 2923-2934

Released	2013-01-23
Method	X-RAY DIFFRACTION 3.2 Å
Organisms	Betapolyomavirus macacae
Macromolecule	Large T antigen (protein) Site I DNA (nucleic acid)

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4LIF	Download File View File

Crystal structure of the JCV large T-antigen origin binding domain

Meinke, G., Bohm, A., Bullock, P.

(2014) PLoS Pathog 10: e1003966-e1003966

Released	2014-03-05
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	JC polyomavirus
Macromolecule	Large T antigen (protein)
Unique Ligands	SO4

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4LMD	Download File View File

Crystal structure of the JCV large t-antigen origin binding domain

Meinke, G., Bohm, A., Bullock, P.

(2014) PLoS Pathog 10: e1003966-e1003966

Released	2014-04-02
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	JC polyomavirus
Macromolecule	Large T antigen (protein)
Unique Ligands	FLC, GOL

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4NBP	Download File View File

Crystal structure of the JCV large T-antigen origin binding domain

Meinke, G., Bohm, A., Bullock, P.

(2014) PLoS Pathog 10: e1003966-e1003966

Released	2014-03-05
Method	X-RAY DIFFRACTION 1.315 Å
Organisms	JC polyomavirus
Macromolecule	Large T antigen (protein)
Unique Ligands	TLA

1 to 25 of 29 Structures

Page 1 of 2

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