RCSB PDB: Search

Warning You are using a web browser that we do not support. Our website will not work properly. Please update to a newer version or download a new web browser, such as Chrome or Firefox.

Help

Help

RCSB PDB

Deposit
- PDBx/mmCIF file
- pdb_extract
- SF-Tool
- Ligand Expo
- MAXIT
- Validation Server
- Validation API
- Information for Journals
- Validation Task Forces
- wwPDB OneDep System
- PDB-IHM
Search
Visualize
Analyze
Download
Learn
- Training Courses
- Guide to PDB Data
- Molecule of the Month
- Educational Resources
- Curricula
- Browse
- News
- SciArt Galleries
- Irving Geis
- David Goodsell
About
Careers
COVID-19

232,829 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

	Include CSM
Advanced Search \| Browse Annotations		Help

Search
Query History
Browse Annotations
MyPDB

QUERY: Structure Author = "Koszelak, S."

MyPDB Login

Search API

Advanced Search Query Builder

Help

Full Text

Structure Attributes

Help

NOT

Count

Add Subquery

Chemical Attributes

Sequence Similarity

Sequence Motif

Structure Similarity

Structure Motif

Chemical Similarity

Return

grouped by

Include Computed Structure Models (CSM)

Count

Clear

Search Summary

This query matches 58 Structures.

Refinements

Structure Determination Methodology

experimental (58)

Scientific Name of Source Organism

	Homo sapiens (14)
	Plasmodium falciparum 3D7 (13)
	Caenorhabditis elegans (8)
	Danio rerio (5)
	Chlamydomonas reinhardtii (4)
	Thermosynechococcus vestitus BP-1 (4)
	Mus musculus (3)
	Plasmodium falciparum (3)
	Synechococcus elongatus PCC 7942 = FACHB-805 (3)
	Synechococcus elongatus (2)

More...

Taxonomy

	Eukaryota (49)
	Bacteria (9)
	Eukaryota (eukaryotes) (2)

Experimental Method

	X-RAY DIFFRACTION (44)
	SOLUTION NMR (14)

Polymer Entity Type

	Protein (58)
	DNA (1)

Refinement Resolution (Å)

	1.0 - 1.5 (5)
	1.5 - 2.0 (8)
	2.0 - 2.5 (19)
	2.5 - 3.0 (6)
	3.0 - 3.5 (5)
	3.5 - 4.0 (1)

Release Date

	2000 - 2004 (9)
	2005 - 2009 (11)
	2010 - 2014 (15)
	2015 - 2019 (8)
	2020 - 2024 (15)

Enzyme Classification Name

	Transferases (4)
	Hydrolases (3)

Membrane Protein Annotation

OPM (1)

Symmetry Type

	Asymmetric (43)
	Cyclic (17)

SCOP Classification

	Alpha and beta proteins (a/b) (14)
	Artifacts (9)
	All alpha proteins (8)
	All beta proteins (2)

AllSelected

1 to 25 of 58 Structures

Page 1 of 3

Sort by

Explore in 3D

1M2E	Download File View File

Solution structure of the N-terminal domain of Synechococcus elongatus KaiA (KaiA135N); Average minimized structure.

Williams, S.B., Vakonakis, I., Golden, S.S., LiWang, A.C.

(2002) Proc Natl Acad Sci U S A 99: 15357-15362

Released	2002-11-13
Method	SOLUTION NMR
Organisms	Synechococcus elongatus
Macromolecule	KaiA (protein)

Explore in 3D

1M2F	Download File View File

Solution structure of the N-terminal domain of Synechococcus elongatus KaiA (KaiA135N); Family of 25 structures

Williams, S.B., Vakonakis, I., Golden, S.S., LiWang, A.C.

(2002) Proc Natl Acad Sci U S A 99: 15357-15362

Released	2002-11-13
Method	SOLUTION NMR
Organisms	Synechococcus elongatus
Macromolecule	KaiA (protein)

Explore in 3D

1Q6A	Download File View File

Solution Structure of the C-terminal Domain of Thermosynechococcus elongatus KaiA (ThKaiA180C); Averaged Minimized Structure

Vakonakis, I., Sun, J., Holzenburg, A., Golden, S.S., LiWang, A.C.

(2004) Proc Natl Acad Sci U S A 101: 1479-1484

Released	2003-08-19
Method	SOLUTION NMR
Organisms	Thermosynechococcus vestitus BP-1
Macromolecule	Circadian clock protein KaiA homolog (protein)

Explore in 3D

1Q6B	Download File View File

Solution Structure of the C-terminal Domain of Thermosynechococcus elongatus KaiA (ThKaiA180C); Ensemble of 25 Structures

Vakonakis, I., Sun, J., Golden, S.S., Holzenburg, A., LiWang, A.C.

(2004) Proc Natl Acad Sci U S A 101: 1479-1484

Released	2003-08-19
Method	SOLUTION NMR
Organisms	Thermosynechococcus vestitus BP-1
Macromolecule	Circadian clock protein KaiA homolog (protein)

Explore in 3D

1R8J	Download File View File

Crystal Structure of Circadian Clock Protein KaiA from Synechococcus elongatus

Ye, S., Vakonakis, I., Sacchettini, J.C., LiWang, A.C.

(2004) J Biological Chem 279: 20511-20518

Released	2004-06-01
Method	X-RAY DIFFRACTION 2.03 Å
Organisms	Synechococcus elongatus PCC 7942 = FACHB-805
Macromolecule	KaiA (protein)

Explore in 3D

1SUY	Download File View File

NMR structure of the ThKaiA180C-CIIABD complex (average minimized structure)

Vakonakis, I., LiWang, A.C.

(2004) Proc Natl Acad Sci U S A 101: 10925-10930

Released	2004-08-03
Method	SOLUTION NMR
Organisms	Thermosynechococcus vestitus BP-1
Macromolecule	circadian clock protein KaiA (protein) circadian clock protein KaiC (protein)

Explore in 3D

1SV1	Download File View File

NMR structure of the ThKaiA180C-CIIABD complex (25-structure ensemble)

Vakonakis, I., LiWang, A.C.

(2004) Proc Natl Acad Sci U S A 101: 10925-10930

Released	2004-08-03
Method	SOLUTION NMR
Organisms	Thermosynechococcus vestitus BP-1
Macromolecule	Circadian clock protein KaiA (protein) Circadian clock protein KaiC (protein)

Explore in 3D

1T4Y	Download File View File

Solution structure of the N-terminal domain of Synechococcus elongatus SasA (average minimized structure)

Vakonakis, I., Klewer, D.A., LiWang, A.C.

(2004) J Mol Biology 342: 9-17

Released	2004-11-16
Method	SOLUTION NMR
Organisms	Synechococcus elongatus PCC 7942 = FACHB-805
Macromolecule	Adaptive-response sensory-kinase sasA (protein)

Explore in 3D

1T4Z	Download File View File

Solution structure of the N-terminal domain of Synechococcus elongatus SasA (25-structures ensemble)

Vakonakis, I., Klewer, D.A., LiWang, A.C.

(2004) J Mol Biology 342: 9-17

Released	2004-11-16
Method	SOLUTION NMR
Organisms	Synechococcus elongatus PCC 7942 = FACHB-805
Macromolecule	Adaptive-response sensory-kinase sasA (protein)

Explore in 3D

2H41	Download File View File

Solution structure of the second type III domain of human Fibronectin: minimized average structure

Vakonakis, I., Campbell, I.D.

(2007) EMBO J 26: 2575-2583

Released	2007-04-10
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	Fibronectin (protein)

Explore in 3D

2H45	Download File View File

Solution structure of the second type III domain of human Fibronectin: ensemble of 25 structures

Vakonakis, I., Campbell, I.D.

(2007) EMBO J 26: 2575-2583

Released	2007-04-10
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	Fibronectin (protein)

Explore in 3D

2HA1	Download File View File

Complex of the first and second type III domains of human Fibronectin in solution

Vakonakis, I., Campbell, I.D.

(2007) EMBO J 26: 2575-2583

Released	2007-04-10
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	Fibronectin (protein)

Explore in 3D

2JX9	Download File View File

Solution structure of the Gal_lectin domain of mouse Latrophilin-1 GPCR

Vakonakis, I., Campbell, I.D.

To be published

Released	2008-04-29
Method	SOLUTION NMR
Organisms	Mus musculus
Macromolecule	Latrophilin 1 (protein)
Unique Ligands	NAG

Explore in 3D

2JXA	Download File View File

Mouse Latrophilin-1 GPCR Gal_lectin domain in complex with Rhamnose

Vakonakis, I., Campbell, I.D.

To be published

Released	2008-04-29
Method	SOLUTION NMR
Organisms	Mus musculus
Macromolecule	Latrophilin 1 (protein)
Unique Ligands	NAG, RAM

Explore in 3D

2LKL	Download File View File

Structure of the core intracellular domain of PfEMP1

Vakonakis, I., Erat, M.C.

(2012) J Biological Chem 287: 7182-7189

Released	2012-01-25
Method	SOLUTION NMR
Organisms	Plasmodium falciparum
Macromolecule	Erythrocyte membrane protein 1 (PfEMP1) (protein)

Explore in 3D

2VZC	Download File View File

Crystal structure of the C-terminal calponin homology domain of alpha parvin

Lorenz, S., Vakonakis, I., Lowe, E.D., Campbell, I.D., Noble, M.E.M., Hoellerer, M.K.

(2008) Structure 16: 1521

Released	2008-10-28
Method	X-RAY DIFFRACTION 1.05 Å
Organisms	Homo sapiens
Macromolecule	ALPHA-PARVIN (protein)
Unique Ligands	GOL, MPD, MRD, TRS

Explore in 3D

2VZD	Download File View File

Crystal structure of the C-terminal calponin homology domain of alpha parvin in complex with paxillin LD1 motif

Lorenz, S., Vakonakis, I., Lowe, E.D., Campbell, I.D., Noble, M.E.M., Hoellerer, M.K.

(2008) Structure 16: 1521

Released	2008-10-28
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Homo sapiens
Macromolecule	ALPHA-PARVIN (protein) PAXILLIN (protein)
Unique Ligands	EDO, GOL, PG4, PGE

Explore in 3D

2VZG	Download File View File

Crystal structure of the C-terminal calponin homology domain of alpha- parvin in complex with paxillin LD2 motif

Lorenz, S., Vakonakis, I., Lowe, E.D., Campbell, I.D., Noble, M.E.M., Hoellerer, M.K.

(2008) Structure 16: 1521-1531

Released	2008-10-28
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Homo sapiens
Macromolecule	Alpha-parvin (protein) Paxillin (protein)
Unique Ligands	EDO, PG4, PGE

Explore in 3D

2VZI	Download File View File

Crystal structure of the C-terminal calponin homology domain of alpha- parvin in complex with paxillin LD4 motif

Lorenz, S., Vakonakis, I., Lowe, E.D., Campbell, I.D., Noble, M.E.M., Hoellerer, M.K.

(2008) Structure 16: 1521-1531

Released	2008-10-28
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Homo sapiens
Macromolecule	Alpha-parvin (protein) Paxillin,Paxillin (protein)
Unique Ligands	EDO, PG4, PGE

Explore in 3D

3EJH	Download File View File

Crystal Structure of the Fibronectin 8-9FnI Domain Pair in Complex with a Type-I Collagen Peptide

Erat, M.C., Lowe, E.D., Campbell, I.D., Vakonakis, I.

(2009) Proc Natl Acad Sci U S A 106: 4195-4200

Released	2009-02-03
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Homo sapiens
Macromolecule	Collagen type-I a1 chain (protein) Fibronectin (protein)
Unique Ligands	GOL, NAG

Explore in 3D

3G9W	Download File View File

Crystal Structure of Talin2 F2-F3 in Complex with the Integrin Beta1D Cytoplasmic Tail

Anthis, N.J., Wegener, K.L., Ye, F., Kim, C., Lowe, E.D., Vakonakis, I., Bate, N., Critchley, D.R., Ginsberg, M.H., Campbell, I.D.

(2009) EMBO J 28: 3623-3632

Released	2009-10-20
Method	X-RAY DIFFRACTION 2.165 Å
Organisms	Homo sapiens Mus musculus
Macromolecule	Integrin beta-1D (protein) Talin-2 (protein)
Unique Ligands	GOL, PEG

Explore in 3D

3GXE	Download File View File

Complex of a Low Affinity Collagen Site with the Fibronectin 8-9FnI Domain Pair

Sladek, B., Campbell, I.D., Vakonakis, I.

(2013) J Biological Chem 288: 17441-17450

Released	2010-04-07
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Homo sapiens
Macromolecule	Collagen alpha-1(I) chain (protein) Fibronectin (protein)
Unique Ligands	GOL, NAG

Explore in 3D

3MQL	Download File View File

Crystal structure of the fibronectin 6FnI1-2FnII7FnI fragment

Erat, M.C., Campbell, I.D., Vakonakis, I.

(2010) J Biological Chem 285: 33764-33770

Released	2010-08-25
Method	X-RAY DIFFRACTION 3.004 Å
Organisms	Homo sapiens
Macromolecule	Fibronectin 1 (protein)
Unique Ligands	MPD, MRD, NAG

Explore in 3D

3PYI	Download File View File

Structure of the N-terminal domain of C. elegans SAS-6

Vakonakis, I., Steinmetz, M.O.

(2011) Cell 144: 364-375

Released	2011-02-09
Method	X-RAY DIFFRACTION 2.104 Å
Organisms	Caenorhabditis elegans
Macromolecule	Spindle assembly abnormal protein 6 (protein)
Unique Ligands	MES, PG4

Explore in 3D

3Q0X	Download File View File

N-terminal coiled-coil dimer domain of C. reinhardtii SAS-6 homolog Bld12p

Kitagawa, D., Vakonakis, I., Olieric, N., Hilbert, M., Keller, D., Olieric, V., Bortfeld, M., Erat, M.C., Flueckiger, I., Goenczy, P., Steinmetz, M.O.

(2011) Cell 144: 364-375

Released	2011-02-09
Method	X-RAY DIFFRACTION 3.02 Å
Organisms	Chlamydomonas reinhardtii
Macromolecule	Centriole protein (protein)

1 to 25 of 58 Structures

Page 1 of 3

Sort by

About
About Us
Citing Us
Publications
Team
Careers
Usage & Privacy

Support
Contact Us
Help
Website FAQ
Glossary
Service Status

RCSB PDB is hosted by

RCSB PDB is a member of the

RCSB Partners
Nucleic Acid Knowledgebase

wwPDB Partners
RCSB PDB
PDBe
PDBj
BMRB
EMDB

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

All questions and comments will receive a response in a timely manner.

Use this form for questions about RCSB.org and RCSB PDB services.
Please attach a screenshot when reporting an issue, if possible.
To update/release your in-progress structure depositions:
access the OneDep Communication panel
For questions/corrections to specific PDB entries, including citation updates:
email deposit-help@mail.wwpdb.org

First Name

Last Name

Subject

Question, Comment, Feedback or Other

Attach File(s)
Use CTRL or Shift keys to select more than one file ( files max)

I agree to the Help Desk Privacy Policy

Optional: To help us learn more about our users, what is your:

Institution Type

Role

Main Research Interest

Thank you for providing your feedback! Someone will be in touch with you shortly. This window will automatically close in 5 seconds.

Apologies, our feedback server is currently unavailable and we are troubleshooting the issue. In the meantime, please copy and paste the below information into an email addressed to info@rcsb.org

Prepare Data

Validate Data

Deposit Data

Help and Resources

Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification