RCSB PDB: Search

Warning You are using a web browser that we do not support. Our website will not work properly. Please update to a newer version or download a new web browser, such as Chrome or Firefox.

Help

Help

RCSB PDB

Deposit
- PDBx/mmCIF file
- pdb_extract
- SF-Tool
- Ligand Expo
- MAXIT
- Validation Server
- Validation API
- Information for Journals
- Validation Task Forces
- wwPDB OneDep System
- PDB-IHM
Search
Visualize
Analyze
Download
Learn
- Training Courses
- Guide to PDB Data
- Molecule of the Month
- Educational Resources
- Curricula
- Browse
- News
- SciArt Galleries
- Irving Geis
- David Goodsell
About
Careers
COVID-19

232,418 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

	Include CSM
Advanced Search \| Browse Annotations		Help

Search
Query History
Browse Annotations
MyPDB

QUERY: Structure Author = "Motozono, C."

MyPDB Login

Search API

Advanced Search Query Builder

Help

Full Text

Structure Attributes

Help

NOT

Count

Add Subquery

Chemical Attributes

Sequence Similarity

Sequence Motif

Structure Similarity

Structure Motif

Chemical Similarity

Return

grouped by

Include Computed Structure Models (CSM)

Count

Clear

Search Summary

This query matches 13 Structures.

Refinements

Structure Determination Methodology

experimental (13)

Scientific Name of Source Organism

	Homo sapiens (13)
	Severe acute respiratory syndrome coronavirus 2 (8)
	Influenza A virus (3)

Taxonomy

	Eukaryota (13)
	Riboviria (11)

Experimental Method

X-RAY DIFFRACTION (13)

Polymer Entity Type

Protein (13)

Refinement Resolution (Å)

	1.0 - 1.5 (2)
	1.5 - 2.0 (6)
	2.0 - 2.5 (3)
	2.5 - 3.0 (2)

Release Date

	2010 - 2014 (1)
	2015 - 2019 (1)
	2020 - 2024 (11)

Symmetry Type

Asymmetric (13)

SCOP Classification

All beta proteins (1)

AllSelected

1 to 13 of 13 Structures

Page 1 of 1

Sort by

Explore in 3D

4GKZ	Download File View File

HA1.7, a MHC class II restricted TCR specific for haemagglutinin

Holland, C.J., Rizkallah, P.J., Cole, D.K., Sewell, A.K., Godkin, A.J.

(2012) Sci Rep 2: 629-629

Released	2012-11-07
Method	X-RAY DIFFRACTION 2.39 Å
Organisms	Homo sapiens
Macromolecule	Alpha chain of Class II TCR (protein) Beta Chain of Class II TCR (protein)
Unique Ligands	EDO, SO4, TAM

Explore in 3D

6HBY	Download File View File

HLA class II peptide flanking residues tune the immunogenicity of a human tumor-derived epitope

MacLachlan, B., Rizkallah, P.J., Sewell, A.K., Cole, D.K., Godkin, A.J.

(2019) J Biol Chem 294: 20246-20258

Released	2019-08-14
Method	X-RAY DIFFRACTION 1.95 Å
Organisms	Homo sapiens
Macromolecule	ARRPPLAELAALNLSGSRL 5T4 tumour epitope (protein) HLA class II histocompatibility antigen, DR alpha chain (protein) HLA class II histocompatibility antigen, DRB1-1 beta chain (protein)
Unique Ligands	EDO, PO4

Explore in 3D

8CMB	Download File View File

Human Leukocyte Antigen class II allotype DR1 presenting SARS-CoV-2 Spike peptide S486-505

MacLachlan, B.J., Mason, G.H., Godkin, A.J., Rizkallah, P.J.

(2023) Cell Rep 42: 112827-112827

Released	2023-07-26
Method	X-RAY DIFFRACTION 1.84 Å
Organisms	Homo sapiens Severe acute respiratory syndrome coronavirus 2
Macromolecule	HLA class II histocompatibility antigen, DR alpha chain (protein) Human leukocyte antigen DR beta chain allotype DR1 (DRB1*0101) (protein) Spike protein S2' (protein)
Unique Ligands	DHL, EDO

Explore in 3D

8CMC	Download File View File

Human Leukocyte Antigen class II allotype DR1 presenting SARS-CoV-2 Spike peptide S511-530

MacLachlan, B.J., Mason, G.H., Sourfield, D.O., Godkin, A.J., Rizkallah, P.J.

(2023) Cell Rep 42: 112827-112827

Released	2023-07-26
Method	X-RAY DIFFRACTION 1.42 Å
Organisms	Homo sapiens Severe acute respiratory syndrome coronavirus 2
Macromolecule	HLA class II histocompatibility antigen, DR alpha chain (protein) Human leukocyte antigen DR beta chain allotype DR1 (DRB1*0101) (protein) Spike protein S2' (protein)
Unique Ligands	EDO, MES, SO4

Explore in 3D

8CMD	Download File View File

Human Leukocyte Antigen class II allotype DR1 presenting SARS-CoV-2 Spike peptide S761-775

MacLachlan, B.J., Mason, G.H., Sourfield, D.O., Godkin, A.J., Rizkallah, P.J.

(2023) Cell Rep 42: 112827-112827

Released	2023-07-26
Method	X-RAY DIFFRACTION 2.54 Å
Organisms	Homo sapiens Severe acute respiratory syndrome coronavirus 2
Macromolecule	HLA class II histocompatibility antigen, DR alpha chain (protein) Human leukocyte antigen DR beta chain allotype DR1 (DRB1*0101) (protein) Spike protein S2' (protein)
Unique Ligands	EDO

Explore in 3D

8CME	Download File View File

Human Leukocyte Antigen class II allotype DR1 presenting SARS-CoV-2 Membrane peptide M176-190

MacLachlan, B.J., Mason, G.H., Sourfield, D.O., Godkin, A.J., Rizkallah, P.J.

(2023) Cell Rep 42: 112827-112827

Released	2023-07-26
Method	X-RAY DIFFRACTION 2.26 Å
Organisms	Homo sapiens Severe acute respiratory syndrome coronavirus 2
Macromolecule	HLA class II histocompatibility antigen, DR alpha chain (protein) Human leukocyte antigen DR beta chain allotype DR1 (DRB1*0101) (protein) Membrane protein (protein)
Unique Ligands	EDO, MES

Explore in 3D

8CMF	Download File View File

Human Leukocyte Antigen class II allotype DR1 presenting SARS-CoV-2 nsp3 epitope (orf1ab)1350-1364

MacLachlan, B.J., Mason, G.H., Sourfield, D.O., Godkin, A.J., Rizkallah, P.J.

(2023) Cell Rep 42: 112827-112827

Released	2023-07-26
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Homo sapiens Severe acute respiratory syndrome coronavirus 2
Macromolecule	HLA class II histocompatibility antigen, DR alpha chain (protein) Human leukocyte antigen DR beta chain allotype DR1 (DRB1*0101) (protein) SARS-Cov-2 nsp3 epitope (orf1ab)1350-1364 (protein)
Unique Ligands	EDO, SIN

Explore in 3D

8CMG	Download File View File

Human Leukocyte Antigen class II allotype DR1 presenting SARS-CoV-2 nsp14 peptide (orf1ab)6420-6434

MacLachlan, B.J., Mason, G.H., Sourfield, D.O., Godkin, A.J., Rizkallah, P.J.

(2023) Cell Rep 42: 112827-112827

Released	2023-07-26
Method	X-RAY DIFFRACTION 1.64 Å
Organisms	Homo sapiens Severe acute respiratory syndrome coronavirus 2
Macromolecule	HLA class II histocompatibility antigen, DR alpha chain (protein) Human leukocyte antigen DR beta chain allotype DR1 (DRB1*0101) (protein) Non-structural protein 7 (protein)
Unique Ligands	EDO, SO4

Explore in 3D

8CMH	Download File View File

Human Leukocyte Antigen class II allotype DR1 presenting SARS-CoV-2 Omicron (BA.1) Spike peptide S486-505

MacLachlan, B.J., Mason, G.H., Sourfield, D.O., Godkin, A.J., Rizkallah, P.J.

(2023) Cell Rep 42: 112827-112827

Released	2023-07-26
Method	X-RAY DIFFRACTION 1.64 Å
Organisms	Homo sapiens Severe acute respiratory syndrome coronavirus 2
Macromolecule	HLA class II histocompatibility antigen, DR alpha chain (protein) Human leukocyte antigen DR beta chain allotype DR1 (DRB1*0101) (protein) Spike protein S2' (protein)
Unique Ligands	DHL, EDO, SO4

Explore in 3D

8CMI	Download File View File

Human Leukocyte Antigen class II allotype DR1 presenting SARS-CoV-2 Omicron (BA.1) Spike peptide S761-775

MacLachlan, B.J., Mason, G.H., Sourfield, D.O., Godkin, A.J., Rizkallah, P.J.

(2023) Cell Rep 42: 112827-112827

Released	2023-07-26
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Homo sapiens Severe acute respiratory syndrome coronavirus 2
Macromolecule	HLA class II histocompatibility antigen, DR alpha chain (protein) Human leukocyte antigen DR beta chain allotype DR1 (DRB1*0101) (protein) Spike protein S2' (protein)
Unique Ligands	EDO, SO4

Explore in 3D

8PJE	Download File View File

Human Leukocyte Antigen class II allotype DR1 presenting influenza A virus haemagglutinin (HA)306-318 PKYVKQNTLKLAT

MacLachlan, B.J., Wall, A., Greenshields-Watson, A.L., Hesketh, S.J., Cole, D.K., Rizkallah, P.J., Godkin, A.J.

(2024) Cell Rep 43: 114259-114259

Released	2024-06-19
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Homo sapiens Influenza A virus
Macromolecule	HLA class II histocompatibility antigen, DR alpha chain (protein) HLA class II histocompatibility antigen, DRB1 beta chain (protein) Hemagglutinin (protein)
Unique Ligands	EDO, EPE, GOL

Explore in 3D

8PJF	Download File View File

Human Leukocyte Antigen class II allotype DR1 presenting P11T->R modified influenza A virus haemagglutinin (HA)306-318 PKYVKQNTLKLAR

MacLachlan, B.J., Wall, A., Greenshields-Watson, A.L., Cole, D.K., Rizkallah, P.J., Godkin, A.J.

(2024) Cell Rep 43: 114259-114259

Released	2024-06-19
Method	X-RAY DIFFRACTION 1.48 Å
Organisms	Homo sapiens Influenza A virus
Macromolecule	HLA class II histocompatibility antigen, DR alpha chain (protein) HLA class II histocompatibility antigen, DRB1 beta chain (protein) Hemagglutinin HA2 chain (protein)
Unique Ligands	EDO, SO4

Explore in 3D

8PJG	Download File View File

F11 TCR in complex with Human Leukocyte Antigen class II allotype DR1 presenting P11T->R modified influenza A virus haemagglutinin (HA)306-318 PKYVKQNTLKLAR

MacLachlan, B.J., Wall, A., Greenshields-Watson, A.L., Cole, D.K., Rizkallah, P.J., Godkin, A.J.

(2024) Cell Rep 43: 114259-114259

Released	2024-06-19
Method	X-RAY DIFFRACTION 1.83 Å
Organisms	Homo sapiens Influenza A virus
Macromolecule	HLA class II histocompatibility antigen, DR alpha chain (protein) HLA class II histocompatibility antigen, DRB1 beta chain (protein) Hemagglutinin HA2 chain (protein) T cell receptor alpha chain constant (protein) T cell receptor beta constant 1 (protein)
Unique Ligands	EDO, P4G

1 to 13 of 13 Structures

Page 1 of 1

Sort by

About
About Us
Citing Us
Publications
Team
Careers
Usage & Privacy

Support
Contact Us
Help
Website FAQ
Glossary
Service Status

RCSB PDB is hosted by

RCSB PDB is a member of the

RCSB Partners
Nucleic Acid Knowledgebase

wwPDB Partners
RCSB PDB
PDBe
PDBj
BMRB
EMDB

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

All questions and comments will receive a response in a timely manner.

Use this form for questions about RCSB.org and RCSB PDB services.
Please attach a screenshot when reporting an issue, if possible.
To update/release your in-progress structure depositions:
access the OneDep Communication panel
For questions/corrections to specific PDB entries, including citation updates:
email deposit-help@mail.wwpdb.org

First Name

Last Name

Subject

Question, Comment, Feedback or Other

Attach File(s)
Use CTRL or Shift keys to select more than one file ( files max)

I agree to the Help Desk Privacy Policy

Optional: To help us learn more about our users, what is your:

Institution Type

Role

Main Research Interest

Thank you for providing your feedback! Someone will be in touch with you shortly. This window will automatically close in 5 seconds.

Apologies, our feedback server is currently unavailable and we are troubleshooting the issue. In the meantime, please copy and paste the below information into an email addressed to info@rcsb.org

Prepare Data

Validate Data

Deposit Data

Help and Resources

Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Symmetry Type

SCOP Classification