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232,059 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Structure Author = "Prakash, T.P."

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Search Summary

This query matches 31 Structures.

Refinements

Structure Determination Methodology

experimental (31)

Experimental Method

X-RAY DIFFRACTION (31)

Polymer Entity Type

DNA (31)

Refinement Resolution (Å)

	0.5 - 1.0 (1)
	1.0 - 1.5 (12)
	1.5 - 2.0 (15)
	2.0 - 2.5 (2)
	2.5 - 3.0 (1)

Release Date

	2000 - 2004 (15)
	2005 - 2009 (12)
	2010 - 2014 (4)

AllSelected

1 to 25 of 31 Structures

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1I0F	Download File View File

1.6 A STRUCTURE OF THE A-DECAMER GCGTATACGC WITH A SINGLE 2'-O-AMINOOXYETHYL THYMINE IN PLACE OF T6, BA-FORM

Tereshko, V., Wilds, C.J., Minasov, G., Prakash, T.P., Maier, M.A., Howard, A., Wawrzak, Z., Manoharan, M., Egli, M.

(2001) Nucleic Acids Res 29: 1208-1215

Released	2001-04-04
Method	X-RAY DIFFRACTION 1.6 Å
Macromolecule	5'-D(GPCPGPTPAP(127)PAPCPGPC)-3' (nucleic acid)
Unique Ligands	BA

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1I0G	Download File View File

1.45 A STRUCTURE OF THE A-DECAMER GCGTATACGC WITH A SINGLE 2'-O-FLUOROETHYL THYMINE IN PLACE OF T6, MEDIUM NA-SALT

Tereshko, V., Wilds, C.J., Minasov, G., Prakash, T.P., Maier, M.A., Howard, A., Wawrzak, Z., Manoharan, M., Egli, M.

(2001) Nucleic Acids Res 29: 1208-1215

Released	2001-04-04
Method	X-RAY DIFFRACTION 1.45 Å
Macromolecule	5'-D(GPCPGPTPAP(125)PAPCPGPC)-3' (nucleic acid)
Unique Ligands	NA

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1I0J	Download File View File

1.06 A STRUCTURE OF THE A-DECAMER GCGTATACGC WITH A SINGLE 2'-O-METHYL-3'-METHYLENEPHOSPHONATE (T23) THYMINE IN PLACE OF T6, HIGH CS-SALT

Tereshko, V., Wilds, C.J., Minasov, G., Prakash, T.P., Maier, M.A., Howard, A., Wawrzak, Z., Manoharan, M., Egli, M.

(2001) Nucleic Acids Res 29: 1208-1215

Released	2001-04-04
Method	X-RAY DIFFRACTION 1.06 Å
Macromolecule	5'-D(GPCPGPTPAP(T23)PAPCPGPC)-3' (nucleic acid)
Unique Ligands	CS

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1I0K	Download File View File

1.05 A STRUCTURE OF THE A-DECAMER GCGTATACGC WITH A SINGLE 2'-O-METHYL-[TRI(OXYETHYL)] THYMINE IN PLACE OF T6, MEDIUM CS-SALT

Tereshko, V., Wilds, C.J., Minasov, G., Prakash, T.P., Maier, M.A., Howard, A., Wawrzak, Z., Manoharan, M., Egli, M.

(2001) Nucleic Acids Res 29: 1208-1215

Released	2001-04-04
Method	X-RAY DIFFRACTION 1.05 Å
Macromolecule	5'-D(GPCPGPTPAP(126)PAPCPGPC)-3' (nucleic acid)
Unique Ligands	CS

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1I0M	Download File View File

1.05 A STRUCTURE OF THE A-DECAMER GCGTATACGC WITH A SINGLE 2'-O-FLUOROETHYL THYMINE IN PLACE OF T6, HIGH RB-SALT

Tereshko, V., Wilds, C.J., Minasov, G., Prakash, T.P., Maier, M.A., Howard, A., Wawrzak, Z., Manoharan, M., Egli, M.

(2001) Nucleic Acids Res 29: 1208-1215

Released	2001-04-04
Method	X-RAY DIFFRACTION 1.05 Å
Macromolecule	5'-D(GPCPGPTPAP(125)PAPCPGPC)-3' (nucleic acid)
Unique Ligands	RB

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1I0N	Download File View File

1.3 A STRUCTURE OF THE A-DECAMER GCGTATACGC WITH A SINGLE 2'-O-METHYL-[TRI(OXYETHYL)] THYMINE IN PLACE OF T6, MEDIUM RB-SALT

Tereshko, V., Wilds, C.J., Minasov, G., Prakash, T.P., Maier, M.A., Howard, A., Wawrzak, Z., Manoharan, M., Egli, M.

(2001) Nucleic Acids Res 29: 1208-1215

Released	2001-04-04
Method	X-RAY DIFFRACTION 1.3 Å
Macromolecule	5'-D(GPCPGPTPAP(126)PAPCPGPC)-3' (nucleic acid)
Unique Ligands	RB

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1I0O	Download File View File

1.6 A STRUCTURE OF THE A-DECAMER GCGTATACGC WITH A SINGLE 2'-O-METHYL-3'-METHYLENEPHOSPHONATE THYMINE IN PLACE OF T6, HIGH K-SALT

Tereshko, V., Wilds, C.J., Minasov, G., Prakash, T.P., Maier, M.A., Howard, A., Wawrzak, Z., Manoharan, M., Egli, M.

(2001) Nucleic Acids Res 29: 1208-1215

Released	2001-04-04
Method	X-RAY DIFFRACTION 2 Å
Macromolecule	5'-D(GPCPGPTPAP(T23)PAPCPGPC)-3' (nucleic acid)
Unique Ligands	K

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1I0P	Download File View File

1.3 A STRUCTURE OF THE A-DECAMER GCGTATACGC WITH A SINGLE 2'-O-METHYL-[TRI(OXYETHYL)], MEDIUM K-SALT

Tereshko, V., Wilds, C.J., Minasov, G., Prakash, T.P., Maier, M.A., Howard, A., Wawrzak, Z., Manoharan, M., Egli, M.

(2001) Nucleic Acids Res 29: 1208-1215

Released	2001-04-04
Method	X-RAY DIFFRACTION 1.3 Å
Macromolecule	5'-D(GPCPGPTPAP(126)PAPCPGPC)-3' (nucleic acid)
Unique Ligands	K

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1I0Q	Download File View File

1.3 A STRUCTURE OF THE A-DECAMER GCGTATACGC WITH A SINGLE 2'-O-METHYL-[TRI(OXYETHYL)] THYMINE IN PLACE OF T6, MEDIUM NA-SALT

Tereshko, V., Wilds, C.J., Minasov, G., Prakash, T.P., Maier, M.A., Howard, A., Wawrzak, Z., Manoharan, M., Egli, M.

(2001) Nucleic Acids Res 29: 1208-1215

Released	2001-04-04
Method	X-RAY DIFFRACTION 1.3 Å
Macromolecule	5'-D(GPCPGPTPAP(126)PAPCPGPC)-3' (nucleic acid)
Unique Ligands	NA

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1I0T	Download File View File

0.6 A STRUCTURE OF Z-DNA CGCGCG

Tereshko, V., Wilds, C.J., Minasov, G., Prakash, T.P., Maier, M.A., Howard, A., Wawrzak, Z., Manoharan, M., Egli, M.

(2001) Nucleic Acids Res 29: 1208-1215

Released	2001-04-04
Method	X-RAY DIFFRACTION 0.6 Å
Macromolecule	5'-D(CPGPCPGPCPG)-3' (nucleic acid)
Unique Ligands	SPM

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1MLX	Download File View File

Crystal Structure Analysis of a 2'-O-[2-(Methylthio)-ethyl]-Modified Oligodeoxynucleotide Duplex

Prakash, T.P., Manoharan, M., Kawasaki, A.M., Fraser, A.S., Lesnik, E.A., Sioufi, N., Leeds, J.M., Teplova, M., Egli, M.

(2002) Biochemistry 41: 11642-11648

Released	2002-12-04
Method	X-RAY DIFFRACTION 1.25 Å
Macromolecule	5'-D(GPCPGPTPAPSMTPAPCPGPC)-3' (nucleic acid)

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1NZG	Download File View File

Crystal structure of A-DNA decamer GCGTA(3ME)ACGC, with a modified 5-methyluridine

Prhavc, M., Prakash, T.P., Minasov, G., Egli, M., Manoharan, M.

(2003) Org Lett 5: 2017-2020

Released	2003-08-26
Method	X-RAY DIFFRACTION 1.6 Å
Macromolecule	5'-D(GPCPGPTPAP(3ME)PAPCPGPC)-3' (nucleic acid)

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1R3G	Download File View File

1.16A X-ray structure of the synthetic DNA fragment with the incorporated 2'-O-[(2-Guanidinium)ethyl]-5-methyluridine residues

Prakash, T.P., Puschl, A., Lesnik, E., Tereshko, V., Egli, M., Manoharan, M.

(2004) Org Lett 6: 1971-1974

Released	2003-10-21
Method	X-RAY DIFFRACTION 1.16 Å
Macromolecule	5'-D(GPCPGPTPAP(GMU)PAPCPGPC)-3') (nucleic acid)
Unique Ligands	MG

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1WV5	Download File View File

X-ray structure of the A-decamer GCGTATACGC with a single 2'-o-butyl thymine in place of T6, Mg-form

Egli, M., Minasov, G., Tereshko, V., Pallan, P.S., Teplova, M., Inamati, G.B., Lesnik, E.A., Owens, S.R., Ross, B.S., Prakash, T.P., Manoharam, M.

(2005) Biochemistry 44: 9045-9057

Released	2005-06-28
Method	X-RAY DIFFRACTION 2.3 Å
Macromolecule	5'-D(GPCPGPTPAP(2BT)PAPCPGPC)-3' (nucleic acid)
Unique Ligands	MG

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1WV6	Download File View File

X-ray structure of the A-decamer GCGTATACGC with a single 2'-O-butyl thymine in place of T6, Sr-form

Egli, M., Minasov, G., Tereshko, V., Pallan, P.S., Teplova, M., Inamati, G.B., Lesnik, E.A., Owens, S.R., Ross, B.S., Prakash, T.P., Manoharam, M.

(2005) Biochemistry 44: 9045-9057

Released	2005-06-28
Method	X-RAY DIFFRACTION 2.55 Å
Macromolecule	5'-D(GPCPGPTPAP(2BT)PAPCPGPC)-3' (nucleic acid)
Unique Ligands	SR

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1XUW	Download File View File

Structural rationalization of a large difference in RNA affinity despite a small difference in chemistry between two 2'-O-modified nucleic acid analogs

Pattanayek, R., Sethaphong, L., Pan, C., Prhavc, M., Prakash, T.P., Manoharan, M., Egli, M.

(2004) J Am Chem Soc 126: 15006-15007

Released	2004-12-14
Method	X-RAY DIFFRACTION 1.25 Å
Macromolecule	DNA (5'-D(GPCPGPTPAP(NMT)PAPCPGPC)-3') (nucleic acid)

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1XUX	Download File View File

Structural rationalization of a large difference in RNA affinity despite a small difference in chemistry between two 2'-O-modified nucleic acid analogs

Pattanayek, R., Sethaphong, L., Pan, C., Prhavc, M., Prakash, T.P., Manoharan, M., Egli, M.

(2004) J Am Chem Soc 126: 15006-15007

Released	2004-12-14
Method	X-RAY DIFFRACTION 1.3 Å
Macromolecule	DNA (5'-D(GPCPGPTPAP(NMS)PAPCPGPC)-3') (nucleic acid)

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1Y7F	Download File View File

Crystal structure of the A-DNA GCGTATCGC with a 2'-O-[2-[hydroxy(methyleneamino)oxy]ethyl] Thymidine (T)

Egli, M., Minasov, G., Tereshko, V., Pallan, P.S., Teplova, M., Inamati, G.B., Lesnik, E.A., Owens, S.R., Ross, B.S., Prakash, T.P., Manoharan, M.

(2005) Biochemistry 44: 9045-9057

Released	2005-06-28
Method	X-RAY DIFFRACTION 1.6 Å
Macromolecule	5'-D(GPCPGPTPAP(2NT)PAPCPGPC)-3') (nucleic acid)
Unique Ligands	BA

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1Y84	Download File View File

Crystal structure of the A-DNA GCGTATCGC with a 2'-O-[2-(imidazolyl)ethyl] Thymidine (T)

Egli, M., Minasov, G., Tereshko, V., Pallan, P.S., Teplova, M., Inamati, G.B., Lesnik, E.A., Owens, S.R., Ross, B.S., Prakash, T.P., Manoharan, M.

(2005) Biochemistry 44: 9045-9057

Released	2005-06-28
Method	X-RAY DIFFRACTION 1.6 Å
Macromolecule	5'-D(GPCPGPTPAP(EIT)PAPCPGPC)-3' (nucleic acid)
Unique Ligands	MG, SPM

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1Y86	Download File View File

Crystal structure of the A-DNA GCGTATCGC with a 2'-O-[2-(fluoro)ethyl] Thymidine (T)

Egli, M., Minasov, G., Tereshko, V., Pallan, P.S., Teplova, M., Inamati, G.B., Lesnik, E.A., Owens, S.R., Ross, B.S., Prakash, T.P., Manoharan, M.

(2005) Biochemistry 44: 9045-9057

Released	2005-06-28
Method	X-RAY DIFFRACTION 1.7 Å
Macromolecule	5'-D(GPCPGPTPAP(125)PAPCPGPC)-3' (nucleic acid)

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1Y8L	Download File View File

Crystal structure of the A-DNA GCGTATCGC with a 2'-O-[2-(trifluoro)ethyl] Thymidine (T)

Egli, M., Minasov, G., Tereshko, V., Pallan, P.S., Teplova, M., Inamati, G.B., Lesnik, E.A., Owens, S.R., Ross, B.S., Prakash, T.P., Manoharan, M.

(2005) Biochemistry 44: 9045-9057

Released	2005-06-28
Method	X-RAY DIFFRACTION 1.5 Å
Macromolecule	5'-D(GPCPGPTPAP(TFE)PAPCPGPC)-3') (nucleic acid)
Unique Ligands	MG, SPM

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1Y8V	Download File View File

Crystal structure of the A-DNA GCGTATCGC with a 2'-O-propyl Thymidine (T)

Egli, M., Minasov, G., Tereshko, V., Pallan, P.S., Teplova, M., Inamati, G.B., Lesnik, E.A., Owens, S.R., Ross, B.S., Prakash, T.P., Manoharan, M.

(2005) Biochemistry 44: 9045-9057

Released	2005-06-28
Method	X-RAY DIFFRACTION 1.5 Å
Macromolecule	5'-D(GPCPGPTPAP(P2T)PAPCPGPC)-3' (nucleic acid)

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1Y9F	Download File View File

Crystal structure of the A-DNA GCGTATCGC with a 2'-O-allyl Thymidine (T)

Egli, M., Minasov, G., Tereshko, V., Pallan, P.S., Teplova, M., Inamati, G.B., Lesnik, E.A., Owens, S.R., Ross, B.S., Prakash, T.P., Manoharan, M.

(2005) Biochemistry 44: 9045-9057

Released	2005-06-28
Method	X-RAY DIFFRACTION 1.6 Å
Macromolecule	5'-D(GPCPGPTPAP(2AT)PAPCPGPC)-3') (nucleic acid)

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1Y9S	Download File View File

Crystal structure of the A-DNA GCGTATCGC with a 2'-O-propargyl Thymidine (T)

Egli, M., Minasov, G., Tereshko, V., Pallan, P.S., Teplova, M., Inamati, G.B., Lesnik, E.A., Owens, S.R., Ross, B.S., Prakash, T.P., Manoharan, M.

(2005) Biochemistry 44: 9045-9057

Released	2005-06-28
Method	X-RAY DIFFRACTION 1.55 Å
Macromolecule	5'-D(GPCPGPTPAP(2GT)PAPCPGPC)-3') (nucleic acid)

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1YB9	Download File View File

Crystal structure of the A-DNA GCGTATCGC with a 2'-O-[2-(N,N-dimethylaminooxy)ethyl] Thymidine (T)

Egli, M., Minasov, G., Tereshko, V., Pallan, P.S., Teplova, M., Inamati, G.B., Lesnik, E.A., Owens, S.R., Ross, B.S., Prakash, T.P., Manoharan, M.

(2005) Biochemistry 44: 9045-9057

Released	2005-06-28
Method	X-RAY DIFFRACTION 1.65 Å
Macromolecule	5'-D(GPCPGPTPAP(2OT)PAPCPGPC)-3') (nucleic acid)
Unique Ligands	SPM

1 to 25 of 31 Structures

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