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232,059 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Structure Author = "Vogl, M.R."

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Search Summary

This query matches 18 Structures.

Refinements

Structure Determination Methodology

experimental (18)

Scientific Name of Source Organism

	Cryptosporidium muris RN66 (4)
	Homo sapiens (3)
	Oryza sativa Japonica Group (3)
	Bacillus subtilis (2)
	Pyrococcus horikoshii (2)
	Aerococcus viridans (1)
	Antarctic bacterium TAB5 (1)
	Streptococcus pneumoniae ATCC 700669 (1)
	synthetic construct (1)

Taxonomy

	Eukaryota (10)
	Bacteria (5)
	Archaea (2)
	other sequences (1)

Experimental Method

	X-RAY DIFFRACTION (15)
	SOLUTION NMR (3)

Polymer Entity Type

	Protein (17)
	DNA (1)

Refinement Resolution (Å)

	1.0 - 1.5 (1)
	1.5 - 2.0 (4)
	2.0 - 2.5 (8)
	2.5 - 3.0 (2)

Release Date

	1995 - 1999 (1)
	2005 - 2009 (4)
	2010 - 2014 (2)
	2015 - 2019 (4)
	2020 - 2024 (7)

Enzyme Classification Name

	Transferases (7)
	Ligases (5)
	Hydrolases (2)
	Oxidoreductases (1)

Symmetry Type

	Cyclic (10)
	Asymmetric (7)

SCOP Classification

	Alpha and beta proteins (a/b) (3)
	All alpha proteins (2)

AllSelected

1 to 18 of 18 Structures

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1WAN	Download File View File

DNA DTA TRIPLEX, NMR, 7 STRUCTURES

Wang, E., Koshlap, K.M., Gillespie, P., Dervan, P.B., Feigon, J.

(1996) J Mol Biol 257: 1052-1069

Released	1996-07-11
Method	SOLUTION NMR
Macromolecule	DNA (5'-D(APGPAPTPAPGPAPAPCPCPCPCPTPTPCPTPAPTPCPTPTPAPTPAPTPCPTP(D3)PTPCPTPT)-3') (nucleic acid)

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2IUC	Download File View File

Structure of alkaline phosphatase from the Antarctic bacterium TAB5

Wang, E., Koutsioulis, D., Leiros, H.K.S., Andersen, O.A., Bouriotis, V., Hough, E., Heikinheimo, P.

(2007) J Mol Biol 366: 1318

Released	2006-11-28
Method	X-RAY DIFFRACTION 1.95 Å
Organisms	Antarctic bacterium TAB5
Macromolecule	ALKALINE PHOSPHATASE (protein)
Unique Ligands	CAC, MG, PO4, ZN

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2J6X	Download File View File

The crystal structure of lactate oxidase

Leiros, I., Wang, E., Rasmussen, T., Oksanen, E., Repo, H., Petersen, S.B., Heikinheimo, P., Hough, E.

(2006) Acta Crystallogr Sect F Struct Biol Cryst Commun 62: 1185

Released	2006-10-23
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Aerococcus viridans
Macromolecule	LACTATE OXIDASE (protein)
Unique Ligands	FMN, ZN

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2VT2	Download File View File

Structure and functional properties of the Bacillus subtilis transcriptional repressor Rex

Wang, E., Bauer, M.C., Rogstam, A., Linse, S., Logan, D.T., von Wachenfeldt, C.

(2008) Mol Microbiol 69: 466-478

Released	2008-09-09
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Bacillus subtilis
Macromolecule	REDOX-SENSING TRANSCRIPTIONAL REPRESSOR REX (protein)
Unique Ligands	NAD

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2VT3	Download File View File

Structure and functional properties of the Bacillus subtilis transcriptional repressor Rex

Wang, E., Bauer, M.C., Rogstam, A., Linse, S., Logan, D., von Wachenfeldt, C.

(2008) Mol Microbiol 69: 466-478

Released	2008-09-09
Method	X-RAY DIFFRACTION 2 Å
Organisms	Bacillus subtilis
Macromolecule	REDOX-SENSING TRANSCRIPTIONAL REPRESSOR REX (protein)
Unique Ligands	ATP

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3LZC	Download File View File

Crystal structure of Dph2 from Pyrococcus horikoshii

Zhang, Y., Zhu, X., Torelli, A.T., Lee, M., Dzikovski, B., Koralewski, R.M., Wang, E., Freed, J., Krebs, C., Lin, H., Ealick, S.E.

(2010) Nature 465: 891-896

Released	2010-06-23
Method	X-RAY DIFFRACTION 2.261 Å
Organisms	Pyrococcus horikoshii
Macromolecule	Dph2 (protein)

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3LZD	Download File View File

Crystal structure of Dph2 from Pyrococcus horikoshii with 4Fe-4S cluster

Torelli, A.T., Zhang, Y., Zhu, X., Lee, M., Dzikovski, B., Koralewski, R.M., Wang, E., Freed, J., Krebs, C., Lin, H., Ealick, S.E.

(2010) Nature 465: 891-896

Released	2010-07-14
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Pyrococcus horikoshii
Macromolecule	Dph2 (protein)
Unique Ligands	SF4, SO4

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5FOG	Download File View File

Crystal structure of hte Cryptosporidium muris cytosolic leucyl-tRNA synthetase editing domain complex with a post-transfer editing analogue of norvaline (Nv2AA)

Palencia, A., Liu, R.J., Lukarska, M., Gut, J., Bougdour, A., Touquet, B., Wang, E.D., Alley, M.R.K., Rosenthal, P.J., Hakimi, M.A., Cusack, S.

(2016) Antimicrob Agents Chemother 60: 5817

Released	2016-08-03
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Cryptosporidium muris RN66
Macromolecule	LEUCYL-TRNA SYNTHETASE (protein)
Unique Ligands	EDO, K, VRT

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5FOL	Download File View File

Crystal structure of the Cryptosporidium muris cytosolic leucyl-tRNA synthetase editing domain complex with a post-transfer editing analogue of isoeucine (Ile2AA)

Palencia, A., Liu, R.J., Lukarska, M., Gut, J., Bougdour, A., Touquet, B., Wang, E.D., Alley, M.R.K., Rosenthal, P.J., Hakimi, M.A., Cusack, S.

(2016) Antimicrob Agents Chemother 60: 5817

Released	2016-08-03
Method	X-RAY DIFFRACTION 1.77 Å
Organisms	Cryptosporidium muris RN66
Macromolecule	LEUCYL-TRNA SYNTHETASE (protein)
Unique Ligands	PO4, SO8

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5FOM	Download File View File

Crystal structure of the Cryptosporidium muris cytosolic leucyl-tRNA synthetase editing domain complex with the adduct AMP-AN6426

Palencia, A., Liu, R.J., Lukarska, M., Gut, J., Bougdour, A., Touquet, B., Wang, E.D., Alley, M.R.K., Rosenthal, P.J., Hakimi, M.A., Cusack, S.

(2016) Antimicrob Agents Chemother 60: 5817

Released	2016-08-03
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Cryptosporidium muris RN66
Macromolecule	LEUCYL-TRNA SYNTHETASE (protein)
Unique Ligands	A2H, PO4

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5FON	Download File View File

Crystal structure of the Cryptosporidium muris cytosolic leucyl-tRNA synthetase editing domain (apo structure)

Palencia, A., Liu, R.J., Lukarska, M., Gut, J., Bougdour, A., Touquet, B., Wang, E.D., Alley, M.R.K., Rosenthal, P.J., Hakimi, M.A., Cusack, S.

(2016) Antimicrob Agents Chemother 60: 5817

Released	2016-08-03
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Cryptosporidium muris RN66
Macromolecule	LEUCYL-TRNA SYNTHETASE (protein)

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7BZJ	Download File View File

The Discovery of Benzhydrol-Oxaborole Hybrid Derivatives as Leucyl-tRNA Synthetase Inhibitors

Liu, R.J., Li, H., Wang, E.D., Zhou, H.

(2021) Bioorg Med Chem 29: 115871-115871

Released	2020-12-09
Method	X-RAY DIFFRACTION 2 Å
Organisms	Streptococcus pneumoniae ATCC 700669
Macromolecule	Leucine--tRNA ligase (protein)
Unique Ligands	FGX

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7ROV	Download File View File

KRAS G12D Mutant in complex with GMPPCP and cyclic peptide MP-9903

Orth, P.

(2021) Chem Sci 12: 15975-15987

Released	2021-09-22
Method	X-RAY DIFFRACTION 1.32 Å
Organisms	Homo sapiens synthetic construct
Macromolecule	Cyclic peptide MP-9903 (protein) Isoform 2B of GTPase KRas (protein)
Unique Ligands	GCP, GOL, MG

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7XED	Download File View File

Crystal Structure of OsCIE1-Ubox and OsUBC8 complex

Zhang, Y., Yu, C.Z.

(2024) Nature 629: 1158-1164

Released	2023-10-04
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Oryza sativa Japonica Group
Macromolecule	U-box domain-containing protein 12 (protein) UBC core domain-containing protein (protein)