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232,418 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Structure Author = "Ying, R."

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Search Summary

This query matches 17 Structures.

Refinements

Structure Determination Methodology

experimental (17)

Scientific Name of Source Organism

	Foot-and-mouth disease virus (strain O1) (4)
	Usutu virus (4)
	rhinovirus A2 (3)
	Mus musculus (2)
	Vaccinia virus WR (2)
	Coxsackievirus B4 (1)
	Foot-and-mouth disease virus (1)
	Foot-and-mouth disease virus O (1)
	Homo sapiens (1)

Taxonomy

	Riboviria (14)
	Eukaryota (3)
	Varidnaviria (2)

Experimental Method

	X-RAY DIFFRACTION (14)
	SOLUTION NMR (3)

Polymer Entity Type

Protein (17)

Refinement Resolution (Å)

	1.0 - 1.5 (1)
	1.5 - 2.0 (9)
	2.0 - 2.5 (2)
	2.5 - 3.0 (1)
	3.0 - 3.5 (1)

Release Date

	1990 - 1994 (1)
	1995 - 1999 (1)
	2000 - 2004 (3)
	2005 - 2009 (3)
	2010 - 2014 (2)
	2015 - 2019 (2)
	2020 - 2024 (5)

Enzyme Classification Name

	Hydrolases (5)
	Transferases (2)

Symmetry Type

	Asymmetric (9)
	Cyclic (8)

SCOP Classification

	All beta proteins (9)
	Alpha and beta proteins (a+b) (6)

AllSelected

1 to 17 of 17 Structures

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1A3R	Download File View File

FAB FRAGMENT (ANTIBODY 8F5) COMPLEXED WITH PEPTIDE FROM HUMAN RHINOVIRUS (SEROTYPE 2) VIRAL CAPSID PROTEIN VP2 (RESIDUES 156-170)

Tormo, J., Blaas, D., Fita, I.

(1994) EMBO J 13: 2247-2256

Released	1998-04-29
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Mus musculus rhinovirus A2
Macromolecule	HUMAN RHINOVIRUS CAPSID PROTEIN VP2 (protein) IGG2A 8F5 FAB (HEAVY CHAIN) (protein) IGG2A 8F5 FAB (LIGHT CHAIN) (protein)

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1BBD	Download File View File

THREE DIMENSIONAL STRUCTURE OF THE FAB FRAGMENT OF A NEUTRALIZING ANTIBODY TO HUMAN RHINOVIRUS SEROTYPE 2

Tormo, J., Blaas, D., Fita, I.

(1992) Protein Sci 1: 1154-1161

Released	1994-01-31
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Mus musculus
Macromolecule	IGG2A-KAPPA 8F5 FAB (HEAVY CHAIN) (protein) IGG2A-KAPPA 8F5 FAB (LIGHT CHAIN) (protein)
Unique Ligands	SO4

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1QMY	Download File View File

FMDV LEADER PROTEASE (LBSHORT-C51A-C133S)

Guarne, A., Tormo, J., Glaser, W., Skern, T., Fita, I.

(2000) J Mol Biol 302: 1227

Released	2000-10-12
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Foot-and-mouth disease virus O
Macromolecule	PROTEASE (protein)
Unique Ligands	EDO

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1QOL	Download File View File

STRUCTURE OF THE FMDV LEADER PROTEASE

Guarne, A., Tormo, J., Kirchweger, R., Pfistermueller, D., Skern, T., Fita, I.

(1998) EMBO J 17: 7469

Released	2000-11-10
Method	X-RAY DIFFRACTION 3 Å
Organisms	Foot-and-mouth disease virus (strain O1)
Macromolecule	PROTEASE (NONSTRUCTURAL PROTEIN P20A) (protein)
Unique Ligands	CL, EDO

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1Z8R	Download File View File

2A cysteine proteinase from human coxsackievirus B4 (strain JVB / Benschoten / New York / 51)

Baxter, N.J., Roetzer, A., Liebig, H.D., Sedelnikova, S.E., Hounslow, A.M., Skern, T., Waltho, J.P.

(2006) J Virol 80: 1451-1462

Released	2006-02-14
Method	SOLUTION NMR
Organisms	Coxsackievirus B4
Macromolecule	Coxsackievirus B4 polyprotein (protein)
Unique Ligands	ZN

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2HRV	Download File View File

2A CYSTEINE PROTEINASE FROM HUMAN RHINOVIRUS 2

Petersen, J.F.W., Cherney, M.M., Liebig, H.-D., Skern, T., Kuechler, E., James, M.N.G.

(1999) EMBO J 18: 5463-5475

Released	2000-05-03
Method	X-RAY DIFFRACTION 1.95 Å
Organisms	rhinovirus A2
Macromolecule	2A CYSTEINE PROTEINASE (protein)
Unique Ligands	ZN

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2JQF	Download File View File

Full Length Leader Protease of Foot and Mouth Disease Virus C51A Mutant

Cencic, R., Mayer, C., Juliano, M.A., Juliano, L., Konrat, R., Kontaxis, G., Skern, T.

(2007) J Mol Biol 373: 1071-1087

Released	2007-07-17
Method	SOLUTION NMR
Organisms	Foot-and-mouth disease virus (strain O1)
Macromolecule	Genome polyprotein (protein)

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2JQG	Download File View File

Leader Protease

Cencic, R., Mayer, C., Juliano, M.A., Juliano, L., Konrat, R., Kontaxis, G., Skern, T.

(2007) J Mol Biol 373: 1071-1087

Released	2007-07-24
Method	SOLUTION NMR
Organisms	Foot-and-mouth disease virus (strain O1)
Macromolecule	Genome polyprotein (protein)

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4LQK	Download File View File

Structure of the vaccinia virus NF- B antagonist A46

Grishkovskaya, I., Fedosyuk, S., Skern, T., Djinovic-Carugo, K.

(2014) J Biol Chem 289: 3749-3762

Released	2013-12-25
Method	X-RAY DIFFRACTION 1.99 Å
Organisms	Vaccinia virus WR
Macromolecule	Protein A46 (protein)
Unique Ligands	BR, NA

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4QBB	Download File View File

Structure of the foot-and-mouth disease virus leader proteinase in complex with inhibitor (N~2~-[(3S)-4-({(2R)-1-[(4-CARBAMIMIDAMIDOBUTYL)AMINO]-4-METHYL-1-OXOPENTAN-2-YL}AMINO)-3-HYDROXY-4-OXOBUTANOYL]-L-ARGINYL-L-PROLINAMIDE)

Grishkovskaya, I., Steinberger, J., Cencic, R., Juliano, M.A., Juliano, L., Skern, T.

(2014) Virology 468-470C: 397-408

Released	2014-11-05
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Foot-and-mouth disease virus (strain O1)
Macromolecule	Leader protease (protein)
Unique Ligands	E69, K, PO4

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5EZU	Download File View File

Crystal structure of the N-terminal domain of vaccinia virus immunomodulator A46 in complex with myristic acid.

Fedosyuk, S., Bezerra, G.A., Sammito, M., Uson, I., Skern, T.

(2016) PLoS Pathog 12: e1006079-e1006079

Released	2016-11-30
Method	X-RAY DIFFRACTION 1.55 Å
Organisms	Vaccinia virus WR
Macromolecule	Protein A46 (protein)
Unique Ligands	MYR

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6FFA	Download File View File

FMDV Leader protease bound to substrate ISG15

Swatek, K.N., Pruneda, J.N., Komander, D.

(2018) Proc Natl Acad Sci U S A 115: 2371-2376

Released	2018-02-21
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Foot-and-mouth disease virus Homo sapiens
Macromolecule	Lbpro (protein) Ubiquitin-like protein ISG15 (protein)
Unique Ligands	GOL, SO4

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6S92	Download File View File

Crystal structure of group A of Usutu virus envelope protein domain III

Schoenenwald, A.K.J., Skern, T.

(2020) Virology 551: 46-57

Released	2020-08-26
Method	X-RAY DIFFRACTION 1.93 Å
Organisms	Usutu virus
Macromolecule	Genome polyprotein (protein)

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6S93	Download File View File

Crystal structure of group B of Usutu virus envelope protein domain III

Schoenenwald, A.K.J., Skern, T.

(2020) Virology 551: 46-57

Released	2020-08-26
Method	X-RAY DIFFRACTION 1.67 Å
Organisms	Usutu virus
Macromolecule	Genome polyprotein (protein)

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6S94	Download File View File

Crystal structure of group D of Usutu virus envelope protein domain III

Schoenenwald, A.K.J., Skern, T.

(2020) Virology 551: 46-57

Released	2020-08-26
Method	X-RAY DIFFRACTION 1.79 Å
Organisms	Usutu virus
Macromolecule	Genome polyprotein (protein)

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6S95	Download File View File

Crystal structure of group I of Usutu virus envelope protein domain III

Schoenenwald, A.K.J., Skern, T.

(2020) Virology 551: 46-57

Released	2020-08-26
Method	X-RAY DIFFRACTION 1.19 Å
Organisms	Usutu virus
Macromolecule	Genome polyprotein (protein)

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7ARA	Download File View File

Rhinovirus A2 2A protease in complex with zVAM.fmk

Deutschmann-Olek, K.M., Skern, T., Bezerra, G.A., Yue, W.W.

(2021) Virology 562: 128-141

Released	2021-07-28
Method	X-RAY DIFFRACTION 2.243 Å
Organisms	rhinovirus A2
Macromolecule	2A protease (protein)
Unique Ligands	S7N, S7Q, ZN

1 to 17 of 17 Structures

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