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232,418 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

QUERY: Citation Author = "Acharya, P."

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This query matches 244 Structures.

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1T2N	Download File View File

Structure of a thermostable triple mutant of Bacillus subtilis lipase obtained through directed evolution

Rajakumara, E., Sankaranarayanan, R.

(2004) J Mol Biol 341: 1271-1281

Released	2004-11-23
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Bacillus subtilis
Macromolecule	Lipase (protein)
Unique Ligands	K

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1T4M	Download File View File

STRUCTURE OF A THERMOSTABLE DOUBLE MUTANT OF BACILLUS SUBTILIS LIPASE OBTAINED THROUGH DIRECTED EVOLUTION

Rajakumara, E., Sankaranarayanan, R.

(2004) J Mol Biol 341: 1271-1281

Released	2004-11-23
Method	X-RAY DIFFRACTION 2 Å
Organisms	Bacillus subtilis
Macromolecule	LIPASE A (protein)
Unique Ligands	K

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1Y5Y	Download File View File

Structure of the tetrahydromethanopterin dependent formaldehyde-activating enzyme (Fae) from Methylobacterium extorquens AM1

Acharya, P., Goenrich, M., Hagemeier, C.H., Demmer, U., Vorholt, J.A., Thauer, R.K., Ermler, U.

(2005) J Biol Chem 280: 13712-13719

Released	2005-01-11
Method	X-RAY DIFFRACTION 2 Å
Organisms	Methylorubrum extorquens AM1
Macromolecule	Formaldehyde-activating enzyme fae (protein)
Unique Ligands	CA, NA

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1Y60	Download File View File

Structure of the tetrahydromethanopterin dependent formaldehyde-activating enzyme (Fae) from Methylobacterium extorquens AM1 with bound 5,10-methylene tetrahydromethanopterin

Acharya, P., Goenrich, M., Hagemeier, C.H., Demmer, U., Vorholt, J.A., Thauer, R.K., Ermler, U.

(2005) J Biol Chem 280: 13712-13719

Released	2005-01-11
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Methylorubrum extorquens AM1
Macromolecule	Formaldehyde-activating enzyme fae (protein)
Unique Ligands	H4M

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2FHJ	Download File View File

Crystal structure of formylmethanofuran: tetrahydromethanopterin formyltransferase in complex with its coenzymes

Acharya, P., Warkentin, E., Thauer, R.K., Shima, S., Ermler, U.

(2006) J Mol Biol 357: 870-879

Released	2006-03-07
Method	X-RAY DIFFRACTION 2 Å
Organisms	Methanopyrus kandleri
Macromolecule	Formylmethanofuran--tetrahydromethanopterin formyltransferase (protein)
Unique Ligands	H4Z, K, MFN, PE3, PE4

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2FHK	Download File View File

Crystal structure of formylmethanofuran: tetrahydromethanopterin formyltransferase in complex with its coenzymes

Acharya, P., Warkentin, E., Thauer, R.K., Shima, S., Ermler, U.

(2006) J Mol Biol 357: 870-879

Released	2006-03-07
Method	X-RAY DIFFRACTION 2 Å
Organisms	Methanopyrus kandleri
Macromolecule	Formylmethanofuran--tetrahydromethanopterin formyltransferase (protein)
Unique Ligands	K, MFN

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2QAD	Download File View File

Structure of tyrosine-sulfated 412d antibody complexed with HIV-1 YU2 gp120 and CD4

Huang, C.-C., Tang, M., Robinson, J., Wyatt, R., Kwong, P.D.

(2007) Science 317: 1930-1934

Released	2007-09-25
Method	X-RAY DIFFRACTION 3.3 Å
Organisms	Homo sapiens Human immunodeficiency virus 1
Macromolecule	Envelope glycoprotein gp160 (protein) T-cell surface glycoprotein CD4 (protein) anti-HIV-1 antibody 412d heavy chain (protein) anti-HIV-1 antibody 412d light chain (protein)
Unique Ligands	EDO, MLA, NAG

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2QXT	Download File View File

Crystal Structure Analysis of the Bacillus subtilis lipase crystallized at pH 4.5

Rajakumara, E., Sankaranarayanan, R.

(2008) Biochim Biophys Acta 1784: 302-311

Released	2007-12-18
Method	X-RAY DIFFRACTION 2 Å
Organisms	Bacillus subtilis
Macromolecule	Lipase (protein)

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2QXU	Download File View File

Crystal Structure Analysis of the Bacillus subtilis lipase crystallized at pH 5.0

Rajakumara, E., Sankaranarayanan, R.

(2008) Biochim Biophys Acta 1784: 302-311

Released	2007-12-18
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Bacillus subtilis
Macromolecule	Lipase (protein)

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2RLL	Download File View File

CCR5 Nt(7-15)

Bewley, C.A., Lam, S.N.

(2007) Science 317: 1930-1934

Released	2007-09-25
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	9-mer from C-C chemokine receptor type 5 (protein)

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4H8W	Download File View File

Crystal structure of non-neutralizing and ADCC-potent antibody N5-i5 in complex with HIV-1 clade A/E gp120 and sCD4.

Tolbert, W.D., Acharya, P., Kwong, P.D., Pazgier, M.

(2014) J Virol 88: 12895-12906

Released	2014-04-09
Method	X-RAY DIFFRACTION 1.85 Å
Organisms	Homo sapiens
Macromolecule	FAB HEAVY CHAIN OF ADCC AND NON-NEUTRALIZING ANTI-HIV-1 ANTIBODY N5-I5 (protein) FAB LIGHT CHAIN OF ADCC AND NON-NEUTRALIZING ANTI-HIV-1 ANTIBODY N5-I5 (protein) HIV-1 CLADE A/E 93TH057 (H375S) GP120 (protein) T-cell surface glycoprotein CD4 (protein)
Unique Ligands	GOL, MRD, NAG

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4JPW	Download File View File

Crystal structure of broadly and potently neutralizing antibody 12a21 in complex with hiv-1 strain 93th057 gp120 mutant

Acharya, P., Luongo, T., Zhou, T., Kwong, P.D.

(2013) Cell 153: 126-138

Released	2013-04-17
Method	X-RAY DIFFRACTION 2.904 Å
Organisms	Homo sapiens Human immunodeficiency virus 1
Macromolecule	HEAVY CHAIN OF ANTIBODY 12A21 (protein) HIV-1 CLADE A/E STRAIN 73TH057 GP120 WITH MUTATION H375S (protein) LIGHT CHAIN OF ANTIBODY 12A21 (protein)
Unique Ligands	EPE, NAG

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4JZW	Download File View File

Crystal structure of CD4-mimetic miniprotein M48U1 in complex with HIV-1 YU2 gp120 in P212121 space group

Acharya, P., Kwong, P.D.

(2013) Structure 21: 1018-1029

Released	2013-06-12
Method	X-RAY DIFFRACTION 1.784 Å
Organisms	Human immunodeficiency virus 1
Macromolecule	CD4-MIMETIC MINIPROTEIN M48U1 (protein) HIV-1 YU2 gp120 glycoprotein (protein)
Unique Ligands	EDO, IPA, NAG, SO4

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4JZZ	Download File View File

Crystal structure of CD4-mimetic miniprotein M48U1 in complex with HIV-1 YU2 gp120 in C2221 space group

Acharya, P., Kwong, P.D.

(2013) Structure 21: 1018-1029

Released	2013-06-12
Method	X-RAY DIFFRACTION 1.49 Å
Organisms	Human immunodeficiency virus 1
Macromolecule	CD4-MIMETIC MINIPROTEIN M48U1 (protein) HIV-1 YU2 gp120 glycoprotein (protein)
Unique Ligands	FLC, IPA, NA, NAG

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4K0A	Download File View File

Crystal structure of CD4-mimetic miniprotein M48U7 in complex with HIV-1 YU2 gp120

Acharya, P., Kwong, P.D.

(2013) Structure 21: 1018-1029

Released	2013-06-12
Method	X-RAY DIFFRACTION 2.13 Å
Organisms	Human immunodeficiency virus 1
Macromolecule	CD4-MIMETIC MINIPROTEIN M48U7 (protein) HIV-1 YU2 gp120 glycoprotein (protein)
Unique Ligands	FLC, IPA, NAG

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4KA2	Download File View File

Crystal structure of CD4-mimetic miniprotein M48U12 in complex with HIV-1 YU2 gp120

Acharya, P., Kwong, P.D.

(2013) J Med Chem 56: 5033-5047

Released	2013-06-19
Method	X-RAY DIFFRACTION 1.79 Å
Organisms	Human immunodeficiency virus 1
Macromolecule	HIV-1 YU2 gp120 (protein) M48U12 (protein)
Unique Ligands	NAG

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4LAJ	Download File View File

Crystal structure of HIV-1 YU2 envelope gp120 glycoprotein in complex with CD4-mimetic miniprotein, M48U1, and llama single-domain, broadly neutralizing, co-receptor binding site antibody, JM4

Acharya, P., Luongo, T.S., Kwong, P.D.

(2013) J Virol 87: 10173-10181

Released	2013-08-14
Method	X-RAY DIFFRACTION 2.14 Å
Organisms	Human immunodeficiency virus 1 Lama glama
Macromolecule	CD4-mimetic miniprotein M48U1 (protein) HIV-1 YU2 gp120 envelope glycoprotein (protein) Llama single domain antibody, JM4 (protein)
Unique Ligands	ACA, EDO, NAG

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4LSP	Download File View File

Crystal structure of broadly and potently neutralizing antibody VRC-CH31 in complex with HIV-1 clade A/E gp120 93TH057

Zhou, T., Moquin, S., Kwong, P.D.

(2013) Immunity 39: 245-258

Released	2013-09-04
Method	X-RAY DIFFRACTION 2.15 Å
Organisms	Homo sapiens Human immunodeficiency virus 1
Macromolecule	HEAVY CHAIN OF ANTIBODY VRC-CH31 (protein) HIV-1 CLADE A/E STRAIN 93TH057 GP120 (protein) LIGHT CHAIN OF ANTIBODY VRC-CH31 (protein)
Unique Ligands	EDO, NA, NAG, PEG, SO4
Unique branched monosaccharides	BMA, NAG

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4LSQ	Download File View File

Crystal structure of broadly and potently neutralizing antibody VRC-CH31 in complex with HIV-1 clade A/E gp120 93TH057 with LOOP D and Loop V5 from clade A strain 3415_v1_c1

Zhou, T., Moquin, S., Kwong, P.D.

(2013) Immunity 39: 245-258

Released	2013-08-21
Method	X-RAY DIFFRACTION 2.25 Å
Organisms	Homo sapiens Human immunodeficiency virus 1
Macromolecule	ENVELOPE GLYCOPROTEIN GP120 WITH LOOP D AND V5 FROM STRAIN 3415_V1_C1 (protein) HEAVY CHAIN OF ANTIBODY VRC-CH31 (protein) LIGHT CHAIN OF ANTIBODY VRC-CH31 WITH N70D MUTATION (protein)
Unique Ligands	BU3, CD, CL, NA, NAG

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4LSR	Download File View File

Crystal structure of broadly and potently neutralizing antibody VRC-CH31 in complex with HIV-1 clade A/E stran 93TH057 gp120 with LOOP D and Loop V5 from clade A strain KER_2018_11

Zhou, T., Moquin, S., Kwong, P.D.

(2013) Immunity 39: 245-258

Released	2013-08-21
Method	X-RAY DIFFRACTION 2.28 Å
Organisms	Homo sapiens Human immunodeficiency virus 1
Macromolecule	ENVELOPE GLYCOPROTEIN GP120 WITH LOOP D AND V5 FROM STRAIN ker_2018_11 (protein) HEAVY CHAIN OF ANTIBODY VRC-CH31 (protein) LIGHT CHAIN OF ANTIBODY VRC-CH31 (N70D MUTATION) (protein)
Unique Ligands	NAG, SO4

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4LSS	Download File View File

Crystal structure of broadly and potently neutralizing antibody VRC01 in complex with HIV-1 clade A strain KER_2018_11 gp120

Zhou, T., Moquin, S., Kwong, P.D.

(2013) Immunity 39: 245-258

Released	2013-08-21
Method	X-RAY DIFFRACTION 2.59 Å
Organisms	Homo sapiens Human immunodeficiency virus 1
Macromolecule	HEAVY CHAIN OF ANTIBODY VRC01 (protein) LIGHT CHAIN OF ANTIBODY VRC01 with N72T mutation (protein) envelope glycoprotein GP120 (protein)
Unique Ligands	EPE, IPA, NA, NAG

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4LST	Download File View File

Crystal structure of broadly and potently neutralizing antibody VRC01 in complex with HIV-1 clade C strain ZM176.66 gp120

Zhou, T., Moquin, S., Kwong, P.D.

(2013) Immunity 39: 245-258

Released	2013-08-21
Method	X-RAY DIFFRACTION 2.55 Å
Organisms	Homo sapiens Human immunodeficiency virus 1
Macromolecule	ENVELOPE GLYCOPROTEIN GP120 of HIV-1 clade C (protein) HEAVY CHAIN OF ANTIBODY VRC01 (protein) LIGHT CHAIN OF ANTIBODY VRC01 (protein)
Unique Ligands	NAG

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4LSU	Download File View File

Crystal structure of broadly and potently neutralizing antibody VRC-PG20 in complex with HIV-1 clade A/E 93TH057 gp120

Zhou, T., Moquin, S., Kwong, P.D.

(2013) Immunity 39: 245-258

Released	2013-08-21
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Homo sapiens Human immunodeficiency virus 1
Macromolecule	HEAVY CHAIN OF ANTIBODY VRC-PG20 (protein) HIV-1 CLADE A/E STRAIN 93TH057 GP120 (protein) LIGHT CHAIN OF ANTIBODY VRC-PG20 (protein)
Unique Ligands	CL, EDO, EPE, NAG

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4LSV	Download File View File

Crystal structure of broadly and potently neutralizing antibody 3BNC117 in complex with HIV-1 clade C C1086 gp120

Zhou, T., Moquin, S., Kwong, P.D.

(2013) Immunity 39: 245-258

Released	2013-08-21
Method	X-RAY DIFFRACTION 3 Å
Organisms	Homo sapiens Human immunodeficiency virus 1
Macromolecule	HEAVY CHAIN OF ANTIBODY 3BNC117 (protein) LIGHT CHAIN OF ANTIBODY 3BNC117 (protein) envelope glycoprotein GP120 (protein)
Unique Ligands	IMD, NAG

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4R4B	Download File View File

Crystal structure of the anti-hiv-1 antibody 2.2c

McLellan, J.S., Acharya, P., Huang, C.-C., Robinson, J., Kwong, P.D.

(2014) J Virol 88: 12895-12906

Released	2014-09-10
Method	X-RAY DIFFRACTION 2.199 Å
Organisms	Homo sapiens
Macromolecule	FAB 2.2C HEAVY CHAIN (protein) FAB 2.2C LIGHT CHAIN (protein)
Unique Ligands	NAG, SO4