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232,418 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Akichika, S."

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Search Summary

This query matches 16 Structures.

Refinements

Structure Determination Methodology

experimental (16)

Scientific Name of Source Organism

	Homo sapiens (12)
	Escherichia coli (6)
	Danio rerio (4)
	synthetic construct (1)

Taxonomy

	Eukaryota (16)
	Bacteria (6)
	other sequences (1)

Experimental Method

	ELECTRON MICROSCOPY (10)
	X-RAY DIFFRACTION (6)

Polymer Entity Type

	Protein (16)
	RNA (11)

Refinement Resolution (Å)

	1.5 - 2.0 (2)
	2.0 - 2.5 (7)
	2.5 - 3.0 (7)

Release Date

	2015 - 2019 (6)
	2020 - 2024 (10)

Enzyme Classification Name

	Transferases (6)
	Lyases (4)

Symmetry Type

Asymmetric (16)

AllSelected

1 to 16 of 16 Structures

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Explore in 3D

6IRV	Download File View File

Crystal structure of the human cap-specific adenosine methyltransferase

Hirano, S., Nishimasu, H., Ishitani, R., Nureki, O.

(2019) Science 363:

Released	2018-12-05
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Homo sapiens
Macromolecule	Phosphorylated CTD-interacting factor 1 (protein)

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6IRW	Download File View File

Crystal structure of the human cap-specific adenosine methyltransferase bound to SAH

Hirano, S., Nishimasu, H., Ishitani, R., Nureki, O.

(2019) Science 363:

Released	2018-12-05
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Homo sapiens
Macromolecule	Phosphorylated CTD-interacting factor 1 (protein)
Unique Ligands	SAH

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6IRX	Download File View File

Crystal structure of the zebrafish cap-specific adenosine methyltransferase

Hirano, S., Nishimasu, H., Ishitani, R., Nureki, O.

(2019) Science 363:

Released	2018-12-05
Method	X-RAY DIFFRACTION 2 Å
Organisms	Danio rerio
Macromolecule	PDX1 C-terminal-inhibiting factor 1 (protein)

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6IRY	Download File View File

Crystal structure of the zebrafish cap-specific adenosine methyltransferase bound to SAH

Hirano, S., Nishimasu, H., Ishitani, R., Nureki, O.

(2019) Science 363:

Released	2018-12-05
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Danio rerio
Macromolecule	PDX1 C-terminal-inhibiting factor 1 (protein)
Unique Ligands	EDO, SAH

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6IRZ	Download File View File

Crystal structure of the zebrafish cap-specific adenosine methyltransferase bound to SAH and m7G-capped RNA

Hirano, S., Nishimasu, H., Ishitani, R., Nureki, O.

(2019) Science 363:

Released	2018-12-05
Method	X-RAY DIFFRACTION 2 Å
Organisms	Danio rerio
Macromolecule	PDX1 C-terminal-inhibiting factor 1 (protein)
Unique Ligands	EDO, M7G, SAH

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6IS0	Download File View File

Crystal structure of the zebrafish cap-specific adenosine methyltransferase bound to SAH and m7G-capped RNA

Hirano, S., Nishimasu, H., Ishitani, R., Nureki, O.

(2019) Science 363:

Released	2018-12-05
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Danio rerio synthetic construct
Macromolecule	PDX1 C-terminal-inhibiting factor 1 (protein) m7G-capped RNA (nucleic acid)
Unique Ligands	B3P, EDO, M7G, SAH

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7Y7C	Download File View File

Structure of the Bacterial Ribosome with human tRNA Asp(G34) and mRNA(GAU)

Ishiguro, K., Yokoyama, T., Shirouzu, M., Suzuki, T.

(2023) Cell 186: 5517

Released	2023-10-25
Method	ELECTRON MICROSCOPY 2.51 Å
Organisms	Escherichia coli Homo sapiens
Macromolecule	Unique protein chains: 49 Unique nucleic acid chains: 6
Unique Ligands	MG

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7Y7D	Download File View File

Structure of the Bacterial Ribosome with human tRNA Asp(Q34) and mRNA(GAU)

Ishiguro, K., Yokoyama, T., Shirouzu, M., Suzuki, T.

(2023) Cell 186: 5517

Released	2023-10-25
Method	ELECTRON MICROSCOPY 2.58 Å
Organisms	Escherichia coli Homo sapiens
Macromolecule	Unique protein chains: 49 Unique nucleic acid chains: 6
Unique Ligands	MG

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7Y7E	Download File View File

Structure of the Bacterial Ribosome with human tRNA Asp(ManQ34) and mRNA(GAU)

Ishiguro, K., Yokoyama, T., Shirouzu, M., Suzuki, T.

(2023) Cell 186: 5517

Released	2023-10-25
Method	ELECTRON MICROSCOPY 2.41 Å
Organisms	Escherichia coli Homo sapiens
Macromolecule	Unique protein chains: 49 Unique nucleic acid chains: 6
Unique Ligands	MAN, MG

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7Y7F	Download File View File

Structure of the Bacterial Ribosome with human tRNA Asp(ManQ34) and mRNA(GAC)

Ishiguro, K., Yokoyama, T., Shirouzu, M., Suzuki, T.

(2023) Cell 186: 5517

Released	2023-10-25
Method	ELECTRON MICROSCOPY 2.43 Å
Organisms	Escherichia coli Homo sapiens
Macromolecule	Unique protein chains: 49 Unique nucleic acid chains: 6
Unique Ligands	MAN, MG

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7Y7G	Download File View File

Structure of the Bacterial Ribosome with human tRNA Tyr(GalQ34) and mRNA(UAU)

Ishiguro, K., Yokoyama, T., Shirouzu, M., Suzuki, T.

(2023) Cell 186: 5517

Released	2023-10-25
Method	ELECTRON MICROSCOPY 2.34 Å
Organisms	Escherichia coli Homo sapiens
Macromolecule	Unique protein chains: 49 Unique nucleic acid chains: 6
Unique Ligands	GAL, MG

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7Y7H	Download File View File

Structure of the Bacterial Ribosome with human tRNA Tyr(GalQ34) and mRNA(UAC)

Ishiguro, K., Yokoyama, T., Shirouzu, M., Suzuki, T.

(2023) Cell 186: 5517

Released	2023-10-25
Method	ELECTRON MICROSCOPY 2.51 Å
Organisms	Escherichia coli Homo sapiens
Macromolecule	Unique protein chains: 49 Unique nucleic acid chains: 6
Unique Ligands	GAL, MG

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8JDJ	Download File View File

Structure of the Human cytoplasmic Ribosome with human tRNA Asp(Q34) and mRNA(GAU)

Ishiguro, K., Yokoyama, T., Shirouzu, M., Suzuki, T.

(2023) Cell 186: 5517

Released	2023-12-06
Method	ELECTRON MICROSCOPY 2.5 Å
Organisms	Homo sapiens
Macromolecule	Unique protein chains: 73 Unique nucleic acid chains: 6
Unique Ligands	MG, ZN

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8JDK	Download File View File

Structure of the Human cytoplasmic Ribosome with human tRNA Asp(ManQ34) and mRNA(GAU)

Ishiguro, K., Yokoyama, T., Shirouzu, M., Suzuki, T.

(2023) Cell 186: 5517

Released	2023-12-06
Method	ELECTRON MICROSCOPY 2.26 Å
Organisms	Homo sapiens
Macromolecule	Unique protein chains: 73 Unique nucleic acid chains: 6
Unique Ligands	MAN, MG, ZN

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8JDL	Download File View File

Structure of the Human cytoplasmic Ribosome with human tRNA Tyr(GalQ34) and mRNA(UAU) (non-rotated state)

Ishiguro, K., Yokoyama, T., Shirouzu, M., Suzuki, T.

(2023) Cell 186: 5517

Released	2023-12-06
Method	ELECTRON MICROSCOPY 2.42 Å
Organisms	Homo sapiens
Macromolecule	Unique protein chains: 73 Unique nucleic acid chains: 6
Unique Ligands	GAL, MG, ZN

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8JDM	Download File View File

Structure of the Human cytoplasmic Ribosome with human tRNA Tyr(GalQ34) and mRNA(UAU) (rotated state)

Ishiguro, K., Yokoyama, T., Shirouzu, M., Suzuki, T.

(2023) Cell 186: 5517

Released	2023-12-06
Method	ELECTRON MICROSCOPY 2.67 Å
Organisms	Homo sapiens
Macromolecule	Unique protein chains: 73 Unique nucleic acid chains: 6
Unique Ligands	GAL, MG, ZN

1 to 16 of 16 Structures

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